View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1474_low_8 (Length: 238)
Name: NF1474_low_8
Description: NF1474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1474_low_8 |
 | |
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| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1064 (1 HSPs) |
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| [»] scaffold0217 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 14233973 - 14233754
Alignment:
| Q |
19 |
ttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233973 |
ttactgccttagtaaaaccatctgcaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatct |
14233874 |
T |
|
| Q |
119 |
ggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14233873 |
ggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcactacttca |
14233774 |
T |
|
| Q |
219 |
catttaagctccttcatcac |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14233773 |
catttaagctccttcatcac |
14233754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 9881147 - 9880926
Alignment:
| Q |
19 |
ttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaa-tc |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
9881147 |
ttactgccttagtaaaaccatctgcaagttgcaactcagtgggacaatattgcacctcattcattccattagtcatctgctccctaataaaatggaattt |
9881048 |
T |
|
| Q |
118 |
tggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaaga-tttgttgtcaattctgagggttagaggcttcaccactt |
216 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||| | || |
|
|
| T |
9881047 |
tagtctctatgtgcttgcttctaccatgtgagatgggattcttagcaagacttatggtagattttgttgtcaattatgagggttagaggcttcacaattt |
9880948 |
T |
|
| Q |
217 |
cacatttaagctccttcatcac |
238 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
9880947 |
cacatttaagctctttcatcac |
9880926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 5707025 - 5706808
Alignment:
| Q |
21 |
actgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctgg |
120 |
Q |
| |
|
||||| || ||||| ||||| | |||||| || || ||||| || || |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5707025 |
actgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattccattagtcacttgctccctaatgaaatggaatctgg |
5706926 |
T |
|
| Q |
121 |
tctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcaca |
220 |
Q |
| |
|
|||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||||||||||||| | || || |||||||| | ||||||||| |
|
|
| T |
5706925 |
tctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaatcttcagtgtcagaggctttatcacttcaca |
5706826 |
T |
|
| Q |
221 |
tttaagctccttcatcac |
238 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
5706825 |
cttgagctctttcatcac |
5706808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 9238420 - 9238596
Alignment:
| Q |
60 |
ggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattct |
159 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||||| || ||||||| | ||||| |||||||| || |||||||||||||| ||||| ||||||| |
|
|
| T |
9238420 |
ggacaatactgcaactcaatcataccattagtcacctgcttccaaatgaaacgaaatctagtctcaatatgtttgcttctaccatgagagatgggattct |
9238519 |
T |
|
| Q |
160 |
tagcaaggcttatggaagatttgttgtcaattctgagggtt-agaggcttcaccacttcacatttaagctccttcat |
235 |
Q |
| |
|
| |||| ||||||| || |||||||||||||| || ||| |||||||||| ||||||||| |||| ||| ||||| |
|
|
| T |
9238520 |
tgacaagacttatggctgacttgttgtcaattctcagtgttaagaggcttcatcacttcacacttaatctctttcat |
9238596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 26905145 - 26905015
Alignment:
| Q |
60 |
ggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattct |
159 |
Q |
| |
|
|||||||| || | |||||||||| ||||| ||| |||||||| |||||| |||||||| ||||||||||| |||||| ||||||| || ||||| |||| |
|
|
| T |
26905145 |
ggacaataatgtagctcaatcatttcattattcatctgctccccaatgaagtggaatctagtctcaatgtgtttgcttataccatgagaaatagggttct |
26905046 |
T |
|
| Q |
160 |
tagcaaggcttatggaagatttgttgtcaat |
190 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |
|
|
| T |
26905045 |
tagcaagacttatggctgatttgttgtcaat |
26905015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 37786901 - 37787118
Alignment:
| Q |
21 |
actgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctgg |
120 |
Q |
| |
|
||||| || ||||||||||| | |||||| || || ||||| || || |||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
37786901 |
actgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcagctcaatcattccattagtcacttgctctctaatgaaatggaatatgg |
37787000 |
T |
|
| Q |
121 |
tctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcaca |
220 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| |||||||| ||||| ||||||| ||||||||||||||| | || ||||||||||||| ||||||||| |
|
|
| T |
37787001 |
tctcaatgtgtttacttctgccatgtgagattggattctttgcaagacttatggctgatttgttgtcaattttcagtgttagaggcttcatcacttcaca |
37787100 |
T |
|
| Q |
221 |
tttaagctccttcatcac |
238 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
37787101 |
cttaagttccttcatcac |
37787118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 6414455 - 6414317
Alignment:
| Q |
24 |
gccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtct |
123 |
Q |
| |
|
||||| ||||||||||||| ||| |||| || || ||||| || |||| |||||||| ||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
6414455 |
gcctttgtaaaaccatctgcaagctgcaattctgtaggacagtaatgcaactcaatcactccattagtcacctgctccctaatgaaatagaatctagtcc |
6414356 |
T |
|
| Q |
124 |
caatgtgcttgcttctaccatgtgagataggattcttag |
162 |
Q |
| |
|
||||||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
6414355 |
caatgtgtttgcttccgccatgagagatgggattcttag |
6414317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 50778402 - 50778598
Alignment:
| Q |
19 |
ttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatct |
118 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||||||| || ||||| ||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
50778402 |
ttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagctcaatcattcaattagtcacctgctctctaatgaaatggaatct |
50778501 |
T |
|
| Q |
119 |
ggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccact |
215 |
Q |
| |
|
|||||||||||| || || || ||||||||||| |||||||| ||||| ||||||| ||||| || |||||| | || ||||||||||||| |||| |
|
|
| T |
50778502 |
ggtctcaatgtgtttactcctgccatgtgagattggattctttgcaagacttatggctgatttattatcaattttcagtgttagaggcttcatcact |
50778598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3461643 - 3461424
Alignment:
| Q |
19 |
ttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatct |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||| || ||||| ||||| |||| ||||||||||||||||||||| ||||| ||||| ||||||||| | |
|
|
| T |
3461643 |
ttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagctcaatcattccattagtcacatgctctctaataaaatggaatat |
3461544 |
T |
|
| Q |
119 |
ggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttca |
218 |
Q |
| |
|
|||||||||||| || || || |||||| |||| |||||||| |||| ||||||| ||||| || |||||| | || ||||||||||||| ||||||| |
|
|
| T |
3461543 |
ggtctcaatgtgtttactcctgccatgtaagattggattctttacaagacttatggctgatttattatcaattttcagtgttagaggcttcatcacttca |
3461444 |
T |
|
| Q |
219 |
catttaagctccttcatcac |
238 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
3461443 |
cacttaaattccttcatcac |
3461424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 302185 - 301977
Alignment:
| Q |
30 |
gtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgt |
129 |
Q |
| |
|
||||||||||| | |||||| || | ||||| || || |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
302185 |
gtaaaaccatcagcaagttgtagttttgtggggcagtagtgcagctcaatcattccattagtcacctgctctcaaatgaaattgaatctggtctcaatgt |
302086 |
T |
|
| Q |
130 |
gcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctc |
229 |
Q |
| |
|
| || || || ||||||||||| ||||||| ||||| ||| ||| ||||||||||||||| | || ||||||||||||| ||||||||| ||||| || |
|
|
| T |
302085 |
gtttactcctgccatgtgagattagattctttgcaagacttgtggctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttc |
301986 |
T |
|
| Q |
230 |
cttcatcac |
238 |
Q |
| |
|
||||||||| |
|
|
| T |
301985 |
cttcatcac |
301977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 38099476 - 38099653
Alignment:
| Q |
60 |
ggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattct |
159 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||| |
|
|
| T |
38099476 |
ggacaatattgtagttcaatcataccattagtcactcgctccctaatgaaatggaatctagtctcaatgtgtttgattctaccatgagaaataggattcc |
38099575 |
T |
|
| Q |
160 |
tagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatca |
237 |
Q |
| |
|
||||||| ||||||| |||||||||||||| | || |||||||| |||| ||||||||| || ||||| ||||||| |
|
|
| T |
38099576 |
tagcaagacttatggttgatttgttgtcaatcttcagtgttagaggtttcatcacttcacacttgagctctttcatca |
38099653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 39190936 - 39190997
Alignment:
| Q |
32 |
aaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtca |
93 |
Q |
| |
|
||||||||| | ||||||||| || ||||| || || |||| |||||||||||||||||||| |
|
|
| T |
39190936 |
aaaaccatcagcaagttgcagttctgtggggcagtagtgcagctcaatcattccattagtca |
39190997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 18641248 - 18641465
Alignment:
| Q |
21 |
actgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctgg |
120 |
Q |
| |
|
||||| || ||||| ||||| | |||||| || || ||||| || || |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18641248 |
actgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattccattagtcacttgctccctaatgaaatggaatctgg |
18641347 |
T |
|
| Q |
121 |
tctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcaca |
220 |
Q |
| |
|
|||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||||||||||||| | || || |||||||| | ||||||||| |
|
|
| T |
18641348 |
tctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaatcttcagtgtcagaggctttatcacttcaca |
18641447 |
T |
|
| Q |
221 |
tttaagctccttcatcac |
238 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
18641448 |
cttgagctctttcatcac |
18641465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 34983188 - 34983067
Alignment:
| Q |
44 |
aagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctacca |
143 |
Q |
| |
|
||||||||||||| | |||||||| | ||| ||| ||||||||| || || | ||| ||||| |||||||| |||||| |||||||||| || ||| |
|
|
| T |
34983188 |
aagttgcagctcaattggacaatacttcacatcatgcattccatttgtaacttcctctctaataaaatggaacacagtctcagtgtgcttgctcctgcca |
34983089 |
T |
|
| Q |
144 |
tgtgagataggattcttagcaa |
165 |
Q |
| |
|
|| || ||||||||||| |||| |
|
|
| T |
34983088 |
tgagaaataggattctttgcaa |
34983067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 296920 - 296712
Alignment:
| Q |
30 |
gtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgt |
129 |
Q |
| |
|
||||||||||| |||||| || || ||||| || || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
296920 |
gtaaaaccatcaacaagttgtagttctgtggggcagtagtgcaactctatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgt |
296821 |
T |
|
| Q |
130 |
gcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctc |
229 |
Q |
| |
|
| || ||| | ||||| |||| |||||||||||||| ||||||| |||||||||||||| | || || |||||||||| ||||||||| || ||||| |
|
|
| T |
296820 |
gtttacttttgccatgagagacgggattcttagcaagacttatggctgatttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctc |
296721 |
T |
|
| Q |
230 |
cttcatcac |
238 |
Q |
| |
|
|| ||||| |
|
|
| T |
296720 |
ttttatcac |
296712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 30380455 - 30380291
Alignment:
| Q |
74 |
ctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatg |
173 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||| |||||| |||||| |
|
|
| T |
30380455 |
ctcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttacttttgccatgtgagattggattctaagcaagacttatg |
30380356 |
T |
|
| Q |
174 |
gaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcac |
238 |
Q |
| |
|
| |||||||||||||| || |||||||| |||| ||||||||| || ||||| |||||||| |
|
|
| T |
30380355 |
gctgatttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcac |
30380291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 35898442 - 35898321
Alignment:
| Q |
44 |
aagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctacca |
143 |
Q |
| |
|
||||||||| || |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||| |
|
|
| T |
35898442 |
aagttgcagttccgtggagcaatagtgcagctcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgcca |
35898343 |
T |
|
| Q |
144 |
tgtgagataggattcttagcaa |
165 |
Q |
| |
|
||||| || |||||||| |||| |
|
|
| T |
35898342 |
tgtgatattggattctttgcaa |
35898321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 49178 - 48961
Alignment:
| Q |
21 |
actgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctgg |
120 |
Q |
| |
|
||||| || ||||||||||| | |||||| || || ||||| || || |||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
49178 |
actgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcacatgctctctaatgaaatggaatctgg |
49079 |
T |
|
| Q |
121 |
tctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcaca |
220 |
Q |
| |
|
|| |||||| || ||||| ||||| |||| | |||||||||||| |||||| |||||||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
49078 |
tcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctgatttgttgtcaatcttcagtgtcagaggctttaccacttcaca |
48979 |
T |
|
| Q |
221 |
tttaagctccttcatcac |
238 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
48978 |
cttgagctctttcatcac |
48961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 28249016 - 28248799
Alignment:
| Q |
21 |
actgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctgg |
120 |
Q |
| |
|
||||| || ||||||||||| | |||||| || || ||||| || || |||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
28249016 |
actgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcacatgctctctaatgaaatggaatctgg |
28248917 |
T |
|
| Q |
121 |
tctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcaca |
220 |
Q |
| |
|
|| |||||| || ||||| ||||| |||| | |||||||||||| |||||| |||||||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
28248916 |
tcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctgatttgttgtcaatcttcagtgtcagaggctttaccacttcaca |
28248817 |
T |
|
| Q |
221 |
tttaagctccttcatcac |
238 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
28248816 |
cttgagctctttcatcac |
28248799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 2420 - 2523
Alignment:
| Q |
132 |
ttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctcct |
231 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||| || |||||||||||||| | ||||||||||||| ||||||||| |||||||| | |
|
|
| T |
2420 |
ttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagctctt |
2519 |
T |
|
| Q |
232 |
tcat |
235 |
Q |
| |
|
|||| |
|
|
| T |
2520 |
tcat |
2523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 2896 - 2844
Alignment:
| Q |
111 |
tggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagc |
163 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||| |||||||| ||||| |
|
|
| T |
2896 |
tggaatctagtctcaatgtgtttgcttttaccatgtgcaataggatttttagc |
2844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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