View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14750_low_1 (Length: 567)
Name: NF14750_low_1
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14750_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 39578432 - 39577905
Alignment:
| Q |
1 |
aatacaaagatgaatgcataagtcctatcaacttgtgtaatactcctctatttatctnnnnnnnnttaatcgtaaaaaattataataagtaatgtactat |
100 |
Q |
| |
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| T |
39578432 |
aatacaaagacgaatgcataagtcatatcaacttgtgtaatcctcctctatttatctaaaaaaaattaatcgtaaaaaattataataagtaatgtactat |
39578333 |
T |
|
| Q |
101 |
tgtttaaacatattgttttcttttaaccgtctttgctggaaaattgacttgctcagagtcagaatgttcgtttaacttttgattatacaattgaaatttg |
200 |
Q |
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| T |
39578332 |
tgtttaaacatattgttttcttttaaccgtctttgctggaaaattgacttgctcagagtcagaatgttcgtttaacttttgattatacaattgaaatttg |
39578233 |
T |
|
| Q |
201 |
aaacttcaagcttaaacttgaactttttatatgtaaattaattatacatgcgtaggctttatcaatactataaaacctaaactnnnnnnngttgtaatta |
300 |
Q |
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| T |
39578232 |
aaacttcaagcttaaacttaaactttttatatgtaaattaattatacatgcgtaggctttatcaatactataaaacctaaactaaaaaaagttgtaatta |
39578133 |
T |
|
| Q |
301 |
agtacacgagcaaacaannnnnnnngtacaattaagtcattctgttatgcaacagttactcaattgttagttattgccgacaagatattatataaagaag |
400 |
Q |
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| T |
39578132 |
agtacacgagcaaacaattttttttgtacaattaagtcattctgttatgcaacagttactcaattgttagttattgctgacaagatattatataaagaag |
39578033 |
T |
|
| Q |
401 |
tccctaaaccactataaacacagaaacagtattccatccaaaccgcaaacaaacagatgtaagcatgtaggtaggcaaaagaatataatactatagttcc |
500 |
Q |
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| T |
39578032 |
tccctaaaccactataaacacagaaacagtattccatccaaaccgcaaacaaacagatgtaagcatgtaggtaggcaaaagcatataatactatagttcc |
39577933 |
T |
|
| Q |
501 |
aagttttgatagattgttgatctatgca |
528 |
Q |
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| T |
39577932 |
aagttttgatagattgttgatctatgca |
39577905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 39573581 - 39573477
Alignment:
| Q |
172 |
ttaacttttgattatacaattgaaatttgaaacttcaagcttaaacttgaactttttata-tgtaaattaattatacatgcgtaggctttatcaatacta |
270 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||||| |
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| T |
39573581 |
ttaacttttgattatacaattgaacttt--------aagcttaaacttgagctttttataatgtaaattaattatacatgcataggctttatcgatacta |
39573490 |
T |
|
| Q |
271 |
taaaacctaaact |
283 |
Q |
| |
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||| |||||||| |
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| T |
39573489 |
caaagcctaaact |
39573477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 524
Target Start/End: Complemental strand, 39541859 - 39541822
Alignment:
| Q |
487 |
aatactatagttccaagttttgatagattgttgatcta |
524 |
Q |
| |
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| T |
39541859 |
aatacaatagttccaagtattgatagattgttgatcta |
39541822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 39573720 - 39573651
Alignment:
| Q |
101 |
tgtttaaacatattgttttcttttaaccgtctttgctggaaaattgacttgctcagagtcagaatgttcg |
170 |
Q |
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| T |
39573720 |
tgttttaacattttgttttcctttaatcatctgtgctggaaaatgcactcgctcagagtcggaatgttcg |
39573651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 39541973 - 39541941
Alignment:
| Q |
429 |
gtattccatccaaaccgcaaacaaacagatgta |
461 |
Q |
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| T |
39541973 |
gtattccatccgaaccgcaaacaaacagatgta |
39541941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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