View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14750_low_2 (Length: 545)

Name: NF14750_low_2
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14750_low_2
NF14750_low_2
[»] chr5 (18 HSPs)
chr5 (11-440)||(39329520-39329947)
chr5 (245-321)||(2627771-2627848)
chr5 (78-158)||(12848333-12848413)
chr5 (243-304)||(34764495-34764555)
chr5 (20-71)||(41634400-41634451)
chr5 (489-531)||(39329996-39330038)
chr5 (245-304)||(7057376-7057435)
chr5 (245-304)||(39935983-39936042)
chr5 (247-305)||(31113690-31113748)
chr5 (248-309)||(26565191-26565252)
chr5 (76-129)||(41634543-41634596)
chr5 (245-304)||(8229522-8229581)
chr5 (245-322)||(36907001-36907077)
chr5 (76-150)||(7732382-7732456)
chr5 (29-79)||(42990701-42990751)
chr5 (240-301)||(13407016-13407077)
chr5 (22-79)||(27972000-27972057)
chr5 (245-340)||(7732574-7732669)
[»] chr7 (15 HSPs)
chr7 (76-153)||(47277905-47277982)
chr7 (76-156)||(31397068-31397148)
chr7 (245-323)||(9229309-9229387)
chr7 (245-305)||(25310706-25310766)
chr7 (245-305)||(40837306-40837366)
chr7 (88-156)||(44798075-44798143)
chr7 (245-304)||(48153262-48153321)
chr7 (26-71)||(47277153-47277198)
chr7 (245-305)||(43728293-43728353)
chr7 (245-304)||(43495582-43495641)
chr7 (268-327)||(46191935-46191994)
chr7 (243-304)||(44797886-44797947)
chr7 (245-305)||(42040154-42040213)
chr7 (28-76)||(46192335-46192383)
chr7 (245-293)||(48138805-48138853)
[»] chr8 (20 HSPs)
chr8 (76-156)||(37231940-37232020)
chr8 (76-156)||(2813651-2813731)
chr8 (20-79)||(37231784-37231843)
chr8 (76-156)||(14180233-14180311)
chr8 (96-156)||(9136609-9136669)
chr8 (20-79)||(9136783-9136842)
chr8 (20-79)||(14180056-14180115)
chr8 (245-304)||(23877194-23877253)
chr8 (245-304)||(17748499-17748558)
chr8 (245-304)||(31431022-31431081)
chr8 (76-130)||(11558842-11558896)
chr8 (247-313)||(11755401-11755467)
chr8 (245-336)||(2813429-2813521)
chr8 (20-71)||(11558683-11558735)
chr8 (245-304)||(11789072-11789130)
chr8 (245-304)||(12007077-12007136)
chr8 (245-304)||(32856250-32856308)
chr8 (251-305)||(24888464-24888518)
chr8 (251-305)||(25430394-25430448)
chr8 (106-158)||(39297585-39297637)
[»] chr2 (23 HSPs)
chr2 (240-304)||(36467505-36467569)
chr2 (248-305)||(7018195-7018252)
chr2 (76-156)||(36925697-36925776)
chr2 (76-156)||(44986553-44986633)
chr2 (76-149)||(3353278-3353351)
chr2 (76-156)||(45388910-45388990)
chr2 (20-79)||(36526008-36526067)
chr2 (245-304)||(40364042-40364101)
chr2 (245-319)||(26352961-26353035)
chr2 (245-323)||(38595746-38595824)
chr2 (246-326)||(14749645-14749725)
chr2 (245-304)||(30382505-30382564)
chr2 (76-151)||(36525847-36525922)
chr2 (247-305)||(17329087-17329145)
chr2 (244-313)||(8948347-8948416)
chr2 (245-313)||(11458169-11458236)
chr2 (80-124)||(18858636-18858680)
chr2 (245-320)||(36925885-36925959)
chr2 (245-304)||(40498854-40498912)
chr2 (21-79)||(30776686-30776744)
chr2 (29-79)||(43355793-43355843)
chr2 (245-309)||(5591077-5591141)
chr2 (245-305)||(13085183-13085243)
[»] chr1 (14 HSPs)
chr1 (76-156)||(2136952-2137032)
chr1 (76-156)||(29488406-29488488)
chr1 (245-323)||(50709816-50709894)
chr1 (245-334)||(22790817-22790906)
chr1 (245-304)||(11767475-11767534)
chr1 (245-325)||(31183818-31183899)
chr1 (76-156)||(31183611-31183691)
chr1 (245-304)||(4972768-4972827)
chr1 (245-320)||(17936118-17936193)
chr1 (245-322)||(46593964-46594041)
chr1 (245-305)||(10443800-10443860)
chr1 (245-305)||(30193732-30193792)
chr1 (92-140)||(50461109-50461157)
chr1 (76-130)||(51273210-51273264)
[»] chr3 (29 HSPs)
chr3 (76-156)||(31489400-31489480)
chr3 (245-321)||(43472053-43472129)
chr3 (240-304)||(52203680-52203744)
chr3 (243-305)||(27163790-27163852)
chr3 (76-156)||(21853850-21853930)
chr3 (244-304)||(38489565-38489625)
chr3 (76-156)||(47014512-47014592)
chr3 (20-79)||(24611515-24611574)
chr3 (245-304)||(45472830-45472889)
chr3 (245-323)||(51240645-51240723)
chr3 (245-305)||(52695291-52695351)
chr3 (245-323)||(2111721-2111800)
chr3 (76-158)||(21842701-21842783)
chr3 (245-323)||(36171903-36171981)
chr3 (245-326)||(12176447-12176528)
chr3 (76-153)||(24611339-24611416)
chr3 (243-304)||(36505051-36505112)
chr3 (268-304)||(17063820-17063856)
chr3 (247-302)||(20619651-20619706)
chr3 (245-323)||(21854054-21854133)
chr3 (245-304)||(21858549-21858608)
chr3 (20-79)||(24121072-24121131)
chr3 (245-312)||(35433585-35433652)
chr3 (20-78)||(1341729-1341787)
chr3 (76-158)||(21858342-21858424)
chr3 (252-304)||(21842915-21842967)
chr3 (245-289)||(24121416-24121460)
chr3 (27-79)||(47014278-47014330)
chr3 (252-304)||(47014725-47014777)
[»] chr4 (14 HSPs)
chr4 (245-304)||(40217930-40217989)
chr4 (77-156)||(44746576-44746655)
chr4 (245-312)||(34072711-34072778)
chr4 (245-319)||(4776120-4776194)
chr4 (245-323)||(38947560-38947638)
chr4 (23-79)||(22198927-22198983)
chr4 (245-305)||(47724575-47724635)
chr4 (245-296)||(53586619-53586670)
chr4 (250-303)||(42399349-42399402)
chr4 (244-304)||(22198567-22198627)
chr4 (23-79)||(43770620-43770676)
chr4 (245-304)||(6008436-6008495)
chr4 (20-79)||(10037918-10037977)
chr4 (245-284)||(45662034-45662073)
[»] chr6 (13 HSPs)
chr6 (245-321)||(8486307-8486383)
chr6 (247-309)||(12283467-12283529)
chr6 (252-320)||(211365-211433)
chr6 (245-304)||(2987959-2988018)
chr6 (243-305)||(30928614-30928676)
chr6 (247-304)||(12311793-12311850)
chr6 (87-158)||(6724351-6724422)
chr6 (76-148)||(12283608-12283680)
chr6 (20-79)||(7495058-7495117)
chr6 (76-129)||(212017-212070)
chr6 (20-79)||(6724530-6724590)
chr6 (249-304)||(7435056-7435112)
chr6 (245-305)||(17533143-17533203)
[»] scaffold0027 (1 HSPs)
scaffold0027 (245-304)||(8997-9056)
[»] scaffold0015 (1 HSPs)
scaffold0015 (245-305)||(38264-38324)
[»] scaffold0001 (1 HSPs)
scaffold0001 (76-128)||(394327-394379)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 39329520 - 39329947
Alignment:
Q  11 tcgaagaatatgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaacattaatcaaactttgttttgaattctttta 110  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329520 tcgaaaaaaatgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaacattaatcaaactttgttttgaattctttta 39329619  T
Q  111 tcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataannnnnnnnnnnnnnnn----aaattgtgacctttacgattaaatagtaatga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||    
T  39329620 tcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataatttgttttttttttttttttaaattgtgacctttacgattaaatagtaatga 39329719  T
Q  207 agcgtaatcaatacnnnnnnncaagtatattcatacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttat 306  Q
    ||||||||||||||       |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39329720 agcgtaatcaatactttttttcaagtatattcatacatat--aagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcttaaatttat 39329817  T
Q  307 aaattttgtgtatccgcatatttgtatcatattggactagctaggtgtatactacgcacttatctttgttagatgttannnnnnnnnnnnnnnnnncaca 406  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    |||||||||||||||||||||                  ||||    
T  39329818 aaattttgtgtatccgcatatctgtatcatattggactagctaggtgtatact----acttatctttgttagatgttatttttttggaatttttttcaca 39329913  T
Q  407 ttatgctttcaataatgcaaattaaaaggtaacc 440  Q
    ||||||||||||||||||||||||||||||||||    
T  39329914 ttatgctttcaataatgcaaattaaaaggtaacc 39329947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 2627848 - 2627771
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatcc 321  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||| |||| ||| |||||||||||    
T  2627848 atataagttttagtataaaatttttgttaacgtatcttaaccgtatcgtatcctaaattttaaaaaatttgtgtatcc 2627771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 12848413 - 12848333
Alignment:
Q  78 aacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 158  Q
    |||||||| ||||||||||||||| ||| ||||| |||| |||||||||| ||  ||||||||||| ||||||||||||||    
T  12848413 aacattaaacaaactttgttttgagttcctttattgatgtatttgttgatgtcctaatatatgaataaaaatagaatataa 12848333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 34764555 - 34764495
Alignment:
Q  243 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||    
T  34764555 atatataagttttagtataaaaat-ttgttaacgtatcttagacgtatcgtatcttaaattt 34764495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 41634400 - 41634451
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtata 71  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  41634400 atgaagggtaaaaaggtgagattgtgttgtgaaaattcaatggagatgtata 41634451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 39329996 - 39330038
Alignment:
Q  489 ttctcatcacaaattatgcaagtcacaaagtctctcaattgtg 531  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  39329996 ttctcatcacaaattatgcaagtcacaaagtctctctattgtg 39330038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 7057376 - 7057435
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||| ||||||||||||| | ||| |||||||| ||| ||||||||||||||||||||    
T  7057376 atataaattttagtataaaatttttgctaacgtatcttaaccgtatcgtatcctaaattt 7057435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 39935983 - 39936042
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||| ||||||||||||||||  |||| ||||||| ||||| ||||||||||||||||||    
T  39935983 atatgagttttagtataaaaagtttgtcaacgtatcttagctgtatcgtatcctaaattt 39936042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 31113748 - 31113690
Alignment:
Q  247 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||||| | |||||||||||| |  | ||||||||||||||||||||    
T  31113748 ataagttttagtataaaatttttgttaacgtatctcggacgtatcgtatcctaaattta 31113690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 26565191 - 26565252
Alignment:
Q  248 taagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 309  Q
    ||||||||||||| ||| | |||||||||||| ||| | |||||||||||||||||| ||||    
T  26565191 taagttttagtattaaatttttgttaacgtatcttaactgtatcgtatcctaaatttttaaa 26565252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 41634543 - 41634596
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatat 129  Q
    |||||||||| |||||||| |||| | ||||||||| |||||||||||||||||    
T  41634543 tcaacattaaacaaactttatttttagttcttttattgatgcatttgttgatat 41634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 8229522 - 8229581
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| ||||||  | || ||||||||| |||| |||||||||||||||||||    
T  8229522 atataagttttaatataaattttttattaacgtatcttagtcgtatcgtatcctaaattt 8229581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 36907001 - 36907077
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttat-aaattttgtgtatccg 322  Q
    |||||| ||||||||||||||  |||||||||||| ||||||||||  | |||||||||| | |||||| |||||||||    
T  36907001 atataaattttagtataaaaaatttgttaacgtatcttagccgtat--tgtcctaaatttttaaaatttcgtgtatccg 36907077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 7732382 - 7732456
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaata 150  Q
    ||||||| || ||||||| ||||| | ||||||||| ||||||||| |||||||   || |||||||||||||||    
T  7732382 tcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattctaacatatgaatgaaaata 7732456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 42990701 - 42990751
Alignment:
Q  29 aaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||| |||||||    
T  42990701 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaa 42990751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 13407077 - 13407016
Alignment:
Q  240 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa 301  Q
    ||||||||||||| ||||||||||||  | ||| |||||| ||||| |||| ||||||||||    
T  13407077 tacatatataagtcttagtataaaaaattcgttgacgtatcttagctgtattgtatcctaaa 13407016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 27972000 - 27972057
Alignment:
Q  22 gaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||| |||||||||| |||| | ||||||||| |||  |||||||||||||||||    
T  27972000 gaagggtgaaaaagtgagtttgtattgtgaaaatttaataaagatgtataagattcaa 27972057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 7732574 - 7732669
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcct-aaatttataaattttgtgtatccgcatatttgtatcatattg 340  Q
    |||||| |||||||||||| || || ||||| ||| ||| |||||||||||||| || |||| |||||| |||||||| ||||   |||||||||||    
T  7732574 atataaattttagtataaatatttt-ttaacatatattaaccgtatcgtatcctgaattttaaaaatttcgtgtatccacatacccgtatcatattg 7732669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 47277905 - 47277982
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaa 153  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||| |||||||||||    
T  47277905 tcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaa 47277982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 31397148 - 31397068
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  || |||| ||| |||||| |||||    
T  31397148 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatat 31397068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 9229387 - 9229309
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 323  Q
    |||||| |||||||||||| |  |||||||||||| |||||||||||||||| ||| |||| |||||| | ||||||||    
T  9229387 atataaattttagtataaataatttgttaacgtatcttagccgtatcgtatcataattttaaaaatttcgcgtatccgc 9229309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 25310766 - 25310706
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||||| | | |||||||||||| ||| | |||||||||||||||||||    
T  25310766 atataagttttagtataatatttttgttaacgtatcttaactgtatcgtatcctaaattta 25310706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 40837306 - 40837366
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||||||  | ||||||| |||| ||| |||||||||||||||||||||    
T  40837306 atataagttttagtataaattttttgttaatgtatcttaaccgtatcgtatcctaaattta 40837366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 44798143 - 44798075
Alignment:
Q  88 aaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||||||| ||||||||| ||  ||||||||||||||  || ||||||||||||||| |||||    
T  44798143 aaactttgttttgagttcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatat 44798075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 48153262 - 48153321
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||| ||||||||||||| | |||||||| |||||| |||||||| ||||||||||||    
T  48153262 atataaattttagtataaaatttttgttaacatattttggccgtatcatatcctaaattt 48153321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 47277153 - 47277198
Alignment:
Q  26 ggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtata 71  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  47277153 ggtaaaaaagtgagattgtgttgtgaaaattcaatagagatgtata 47277198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 43728293 - 43728353
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    ||||||| |||||||||||||  |||| |||||||  |||||||||||||| |||||||||    
T  43728293 atataagatttagtataaaaaatttgtcaacgtatcctagccgtatcgtattctaaattta 43728353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 43495641 - 43495582
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||  |||| |||||||    
T  43495641 atataagttttagtataaaatttttgttaacgtatcttaaccgtattatatcttaaattt 43495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 46191994 - 46191935
Alignment:
Q  268 ttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcatat 327  Q
    |||||||||||| ||||  |||| ||||||||| |||| |||||| ||||||||||||||    
T  46191994 ttgttaacgtatcttagttgtattgtatcctaattttaaaaatttcgtgtatccgcatat 46191935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 44797947 - 44797886
Alignment:
Q  243 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||| |||||||| ||| || |||||||||||| ||||  |||| |||||||||||||    
T  44797947 atatataaattttagtagaaatattttgttaacgtatcttagatgtatggtatcctaaattt 44797886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 42040213 - 42040154
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||| ||||||  | ||||||||||||  || |||||||||||||||||||||    
T  42040213 atataagttttattataaattt-ttgttaacgtatcctaaccgtatcgtatcctaaattta 42040154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 46192383 - 46192335
Alignment:
Q  28 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagatt 76  Q
    ||||||||||||| ||||| ||||||||| |||| ||||||||| ||||    
T  46192383 taaaaaagtgagaatgtgttgtgaaaattcaatgaagatgtatatgatt 46192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 48138805 - 48138853
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgt 293  Q
    |||||| |||||||||||| || ||||||| |||| |||||||||||||    
T  48138805 atataaattttagtataaatattttgttaatgtatcttagccgtatcgt 48138853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 37231940 - 37232020
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  || |||| ||||||||||||||||    
T  37231940 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcctaacatataaatgaaaatagaatat 37232020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 2813731 - 2813651
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| ||||||||||||||| ||||||||| |||  |||||||||||||  || |||||||||||||||||||||    
T  2813731 tcaacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatat 2813651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 37231784 - 37231843
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  37231784 atgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagatgtatacgattcaa 37231843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 14180233 - 14180311
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| |||||||||||  || ||||||||| ||||||||||||||||||  ||  ||||||||||||||||||||    
T  14180233 tcaacattaaacaaactttgtt--gagttcttttattgatgcatttgttgatatcctaacttatgaatgaaaatagaatat 14180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 9136669 - 9136609
Alignment:
Q  96 ttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    ||||||||||| |||| ||||||||||||||||||  || |||||||||||||||||||||    
T  9136669 ttttgaattctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaatat 9136609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 9136842 - 9136783
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||  |||| |||||||    
T  9136842 atgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagacatatatgattcaa 9136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 14180056 - 14180115
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||||||| |||||  |||||||| |||||||||||||| |||||||    
T  14180056 atgaagggtaaaaaagtgagaatgtgttttgaaaattcaatggagatgtatatgattcaa 14180115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 23877253 - 23877194
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||| |||||||||  | |||||||||||| ||||||||||||||||||||||||    
T  23877253 atataagttgtagtataaattttttgttaacgtatcttagccgtatcgtatcctaaattt 23877194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 17748558 - 17748499
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||  | |||||||| ||| |||||||||| |||||||||||||    
T  17748558 atataagttttagtataaattttttgttaacttatcttagccgtattgtatcctaaattt 17748499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 31431081 - 31431022
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||||||||||| |||| || |||||||||||||| |||||| | ||||||||||    
T  31431081 atataagttttagtatacaaattttattaacgtattttagtcgtatcatctcctaaattt 31431022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 11558842 - 11558896
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatc 130  Q
    |||||||||| |||| |||||||||| ||||||||| | ||||||||||||||||    
T  11558842 tcaacattaaacaaattttgttttgatttcttttattgttgcatttgttgatatc 11558896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 11755467 - 11755401
Alignment:
Q  247 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 313  Q
    |||||||||| ||||||||  |||||||||||| ||||| ||||| ||||||||||||  |||||||    
T  11755467 ataagttttaatataaaaaatttgttaacgtatcttagcagtatcatatcctaaattttaaaatttt 11755401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 2813521 - 2813429
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatccgcatatttgtatcat 336  Q
    |||||| ||||| |||||| || ||||||||  || ||||||||||||||||||||| |||| |||||| | |||||||| |||  |||||||    
T  2813521 atataaattttaatataaatattttgttaacacatcttagccgtatcgtatcctaaattttaaaaatttcgcgtatccgcgtatccgtatcat 2813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 11558683 - 11558735
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtg-aaaattaaatggagatgtata 71  Q
    ||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  11558683 atgaagggtaaaaaaatgagattgtgttgtgaaaaattcaatggagatgtata 11558735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 11789130 - 11789072
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| ||||||| | ||||||||||||  || ||||||||||||||||||||    
T  11789130 atataagttttattataaaatt-ttgttaacgtatcctaaccgtatcgtatcctaaattt 11789072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 12007077 - 12007136
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||| ||| |||||||||  |||||||||||| ||||  ||||||||||||||||||    
T  12007077 atataagatttggtataaaaaatttgttaacgtatcttagttgtatcgtatcctaaattt 12007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 32856250 - 32856308
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||||||| |||||||  |||||||||||| |||| ||||||||||| |||||||    
T  32856250 atataagttttag-ataaaaaaattgttaacgtatcttagtcgtatcgtatcataaattt 32856308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 24888518 - 24888464
Alignment:
Q  251 gttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||  |||||||||||| |  | ||||||||||||||||||||    
T  24888518 gttttagtataaaaaatttgttaacgtatctcggtcgtatcgtatcctaaattta 24888464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 25430394 - 25430448
Alignment:
Q  251 gttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||  ||||||||||||||  | ||||||||||| ||||||||    
T  25430394 gttttagtataaaaaatttgttaacgtatttcggtcgtatcgtatcttaaattta 25430448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 39297637 - 39297585
Alignment:
Q  106 ttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 158  Q
    |||||| ||| ||||||||||||||  ||||||| |||||||||| |||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataa 39297585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 36467505 - 36467569
Alignment:
Q  240 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36467505 tacatatatatattttagtataaaaattttgttaacgtattttagccgtatcgtatcctaaattt 36467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 7018195 - 7018252
Alignment:
Q  248 taagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7018195 taagttttagtataaaaattttgttaacgtatcttagccgtatcgtatcctaaattta 7018252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 36925697 - 36925776
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||| || || ||||||||||||||||||    
T  36925697 tcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgatatct-aacatgtgaatgaaaatagaatat 36925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 44986553 - 44986633
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||| ||||||| | |||||||| |||||    
T  44986553 tcaacattaaacaaactttgttttgggttcttttattgatgcatttgttgatatcttaatatataagtgaaaatataatat 44986633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 3353278 - 3353351
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaat 149  Q
    |||||||||| ||||||||||||||| |||||||||  || ||||||||||||||  || ||||||||||||||    
T  3353278 tcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatatcctaacatatgaatgaaaat 3353351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 45388910 - 45388990
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| || |||||||||| | ||||||||| |||||||||||| |||||  || ||||||||||||||| |||||    
T  45388910 tcaacattaaacatactttgttttaagttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataatat 45388990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 36526067 - 36526008
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||| | |||||||    
T  36526067 atgaagggtaaaaaagtgagattgtgttgtgagaattcaatggagatgtacatgattcaa 36526008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 40364042 - 40364101
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||  | |||||||||||| |||| |||||||||||||||||||    
T  40364042 atataagttttagtataaattttttgttaacgtatcttagtcgtatcgtatcctaaattt 40364101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 26352961 - 26353035
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtat 319  Q
    |||||| |||||||||||| || |||||||||||| |||||||||| ||||||| |||||  |||||| ||||||    
T  26352961 atataaattttagtataaatattttgttaacgtatcttagccgtatggtatcctgaattttaaaatttcgtgtat 26353035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 38595824 - 38595746
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 323  Q
    |||| ||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||| ||| || | ||||||||    
T  38595824 atatgagttttagtataaaaattttgtcaatgtatcttaaccgtatcgtatcctaaatttaaaaagttcgcgtatccgc 38595746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 14749645 - 14749725
Alignment:
Q  246 tataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcata 326  Q
    ||||| |||||||||||| |  || ||||||||| |||  ||||||||||||||| |||| |||||||| |||||||||||    
T  14749645 tataaattttagtataaataatttcttaacgtatcttactcgtatcgtatcctaattttaaaaattttgcgtatccgcata 14749725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 30382564 - 30382505
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||| ||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  30382564 atatgagttttaatataataattttgtcaacgtattttagccgtatcgtattctaaattt 30382505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 36525922 - 36525847
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatag 151  Q
    |||| ||||| |||| |||||||||| || |||||| ||||||||||||||  ||  |||||||||||||||||||    
T  36525922 tcaatattaaacaaattttgttttgagtttttttattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 17329087 - 17329145
Alignment:
Q  247 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||||||  |||||||||||| |  || |||||||||||||||||||    
T  17329087 ataagttttagtataaaaaatttgttaacgtatctcggctgtatcgtatcctaaattta 17329145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 8948347 - 8948416
Alignment:
Q  244 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 313  Q
    ||||||||||||||||||||  | |||||||||||| ||||  ||||| ||||||||||||  |||||||    
T  8948347 tatataagttttagtataaattttttgttaacgtatcttagttgtatcatatcctaaattttaaaatttt 8948416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 11458169 - 11458236
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 313  Q
    ||||||||||| |||||||||  ||||||| ||||||||| ||||||||||| | ||||| ||||||||    
T  11458169 atataagtttttgtataaaaaaattgttaatgtattttagtcgtatcgtatcttcaattt-taaatttt 11458236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 18858636 - 18858680
Alignment:
Q  80 cattaatcaaactttgttttgaattcttttatcgatgcatttgtt 124  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||    
T  18858636 cattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 36925885 - 36925959
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 320  Q
    |||||| |||||||||||| || || ||||||||| ||||||| || ||||||||||||||  ||||||| |||||    
T  36925885 atataaattttagtataaatattttattaacgtatcttagccg-attgtatcctaaatttaataattttgcgtatc 36925959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 40498854 - 40498912
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||  | || ||||||||| ||||| ||||||||||||||||||    
T  40498854 atataagttttagtataaatttttt-ttaacgtatcttagctgtatcgtatcctaaattt 40498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 30776686 - 30776744
Alignment:
Q  21 tgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    |||||||||||||||||||| |||||  | |||||| ||| |||||||||| |||||||    
T  30776686 tgaagggtaaaaaagtgagactgtgttataaaaattcaatcgagatgtatatgattcaa 30776744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 43355843 - 43355793
Alignment:
Q  29 aaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||| |||||||    
T  43355843 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaa 43355793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 5591077 - 5591141
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 309  Q
    |||||||||||||||||||  | || ||||| ||| ||| ||| |||||||||||||||| ||||    
T  5591077 atataagttttagtataaattttttattaacatatcttaaccgcatcgtatcctaaatttttaaa 5591141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 13085183 - 13085243
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||| ||||||||  ||||||||  |  ||||| |||||||||||||||||||    
T  13085183 atataagttttattataaaaagtttgttaacccaagttagctgtatcgtatcctaaattta 13085243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 2136952 - 2137032
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    ||||||||||  ||||||||||||||||||||||||  |||||||||||||||||  || |||||||||||||||||||||    
T  2136952 tcaacattaaataaactttgttttgaattcttttattaatgcatttgttgatatcctaacatatgaatgaaaatagaatat 2137032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 29488406 - 29488488
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattctttt--atcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| ||||||||||||||| |||||||  || ||||||||||||||||||| || ||||||||||||||| |||||    
T  29488406 tcaacattaaacaaactttgttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatat 29488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 50709816 - 50709894
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 323  Q
    |||||| |||||||||||| || || ||||||||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  50709816 atataaattttagtataaatattttattaacgtatcttagccgtatcgtatcctaattttaaaaatttcgtgtatccgc 50709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 22790906 - 22790817
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcatatttgtatc 334  Q
    |||||| |||||||||||| || ||||||| |||| |||||| ||||||||||||| |||| |||||||| |||||||| |||| |||||    
T  22790906 atataaattttagtataaatattttgttaaagtatcttagccatatcgtatcctaattttaaaaattttgcgtatccgcgtattcgtatc 22790817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 11767534 - 11767475
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  11767534 atatatgttttagtataaaaattttgttaacgtatcttaaccgtatcgtatcctaaattt 11767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 31183818 - 31183899
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatccgcat 325  Q
    |||||| |||||| ||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||||    
T  31183818 atataaattttagaataaatattttgttaacgtatcttagccgtatcgtatcctaaattttaaaaattttgcatatccgcat 31183899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 31183611 - 31183691
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||| ||||| ||||||||||||||| ||||| ||| ||| ||||||||||||||  || ||||||| |||||||||||||    
T  31183611 tcaatattaaacaaactttgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaatat 31183691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 4972827 - 4972768
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||||| ||||||||||||  |||  ||||||||||||||||||    
T  4972827 atataagttttagtataaaaattttgttaacgtatcctagttgtatcgtatcctaaattt 4972768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 17936193 - 17936118
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 320  Q
    |||||| |||||||||||| ||   |||||||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  17936193 atataaattttagtataaatattaggttaacgtatcttagccgtaccgtatcctaattttaaaaattttgtgtatc 17936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 46594041 - 46593964
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccg 322  Q
    |||||| |||||||||||| || |||||||||||| ||| | |||||||||||||| |||| |||||| | |||||||    
T  46594041 atataaattttagtataaatattttgttaacgtatcttaactgtatcgtatcctaattttaaaaatttcgcgtatccg 46593964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 10443800 - 10443860
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||| ||||| | |||||| |||  ||||||||||||||||||||||||    
T  10443800 atataagttttagtatgaaaatttcgttaacttatcatagccgtatcgtatcctaaattta 10443860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 30193732 - 30193792
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||| |||||||||||| || ||||||| |||| |||||| ||||||||||||| ||||    
T  30193732 atataaattttagtataaatattttgttaatgtatcttagccctatcgtatcctaatttta 30193792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 50461157 - 50461109
Alignment:
Q  92 tttgttttgaattcttttatcgatgcatttgttgatatctaaatatatg 140  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||||||||    
T  50461157 tttgttttgagttcttttattgatgcatttgttgatatcctaatatatg 50461109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 51273210 - 51273264
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatc 130  Q
    |||| ||||| |||| |||||||||| ||||||||| |||||| |||||||||||    
T  51273210 tcaatattaaacaaattttgttttgagttcttttattgatgcagttgttgatatc 51273264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 31489480 - 31489400
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| |||| |||||||||| ||||||||| |||||||||| |||||||| || ||||||||||||||| |||||    
T  31489480 tcaacattaaacaaattttgttttgagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaaatat 31489400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 43472053 - 43472129
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatcc 321  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||||||||| |||| |||||||| ||||||    
T  43472053 atataaattttagtataaatattttgttaacgtatcttagccgtatcgtatcctaattttaaaaattttgcgtatcc 43472129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 52203744 - 52203680
Alignment:
Q  240 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||    
T  52203744 tacatatataagttttagtataaaatttttgttaacgtatcttagccgaatcgtatcctaaattt 52203680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 27163852 - 27163790
Alignment:
Q  243 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||    
T  27163852 atatataagttttagtataaaatttttgttaacgtatcttagccgtatcgtatcttaaattta 27163790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 21853850 - 21853930
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    ||||||||||  ||| ||||||| || ||||||||| ||||||||||||||||||  || |||||||||||||||||||||    
T  21853850 tcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatat 21853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 38489625 - 38489565
Alignment:
Q  244 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||    
T  38489625 tatataagttttagtataaattttttgttaacgtattttaaccgtatcgtatcctaaattt 38489565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 47014512 - 47014592
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    |||||||||| | ||||||||||| | ||||||||| ||||||||||||||||||  || |||||||||||||| ||||||    
T  47014512 tcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatat 47014592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 24611574 - 24611515
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||    
T  24611574 atgaagggtaaaaaagtgagattgtgttgtgaaaaatcaatggagatgtatatgattcaa 24611515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 45472830 - 45472889
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  45472830 atataagttttaatataaaaattttgttaacatatcttagccatatcgtatcctaaattt 45472889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 51240723 - 51240645
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 323  Q
    |||| ||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||| ||| || | ||||||||    
T  51240723 atatgagttttagtataaaaattttgtcaatgtatcttaaccgtatcgtatcctaaatttaaaaagttcgcgtatccgc 51240645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 52695351 - 52695291
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||| ||||||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||    
T  52695351 atatgagttttagtatcaaaattttgtcaacgtattttagctgtatcgtatcttaaattta 52695291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 2111721 - 2111800
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa-ttttgtgtatccgc 323  Q
    |||||| |||| ||||||| || ||||||| |||| |||||||||||||||||||| |||| ||| ||| ||||||||||    
T  2111721 atataaattttggtataaatattttgttaatgtatcttagccgtatcgtatcctaattttaaaaagtttcgtgtatccgc 2111800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 21842701 - 21842783
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 158  Q
    ||||||||||  |||||||||||  | || |||||| |||| ||||||||||||| |||  |||||||||||||| |||||||    
T  21842701 tcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataaaatataa 21842783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 36171981 - 36171903
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 323  Q
    |||||| | |||||||||| |  ||||||| |||| |||||| ||||||||||||| |||| |||||||| ||||||||    
T  36171981 atataaatattagtataaataatttgttaaagtatcttagccatatcgtatcctaattttaaaaattttgcgtatccgc 36171903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 12176528 - 12176447
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcata 326  Q
    |||||| |||||||| ||| |  |||||||||||| ||| |||||||||||||||| |||| |||||| | |||| ||||||    
T  12176528 atataaattttagtacaaataatttgttaacgtatcttaaccgtatcgtatcctaattttaaaaatttcgcgtattcgcata 12176447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 24611416 - 24611339
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaa 153  Q
    |||||||||| |||||||  |||||| ||||||||| || |||||||||||| |   ||||||||||| |||||||||    
T  24611416 tcaacattaaacaaacttgattttgagttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 36505051 - 36505112
Alignment:
Q  243 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||||  | |||||||| ||| |||| |||||||||||||| ||||    
T  36505051 atatataagttttagtataaattttttgttaacatatcttagacgtatcgtatcctatattt 36505112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 17063856 - 17063820
Alignment:
Q  268 ttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17063856 ttgttaacgtatcttagccgtatcgtatcctaaattt 17063820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 20619651 - 20619706
Alignment:
Q  247 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaat 302  Q
    |||||||| |||| |||||  ||||||| ||||||||| |||||||||||||||||    
T  20619651 ataagtttcagtaaaaaaaaattgttaatgtattttagtcgtatcgtatcctaaat 20619706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 21854054 - 21854133
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt-gtgtatccgc 323  Q
    |||||| ||||| |||||| || |||||| ||||| |||||| |||| ||||||||||||  ||||||| ||||||||||    
T  21854054 atataaattttactataaatattttgttatcgtatcttagccatatcatatcctaaattttaaaattttcgtgtatccgc 21854133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 21858549 - 21858608
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||| |||||||||||| || |||||||||||| ||| | |||||||||||| |||||    
T  21858549 atataaattttagtataaatattttgttaacgtatcttaactgtatcgtatcctgaattt 21858608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 24121072 - 24121131
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||||||| ||||| ||||||| | ||||||| |||||  |||||||    
T  24121072 atgaagggtaaaaaagtgagaatgtgttgtgaaaaatcaatggaggtgtatttgattcaa 24121131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 35433585 - 35433652
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattt 312  Q
    |||||| |||||||||||| |  |||||||||||| |||  ||||||||||||||| |||| ||||||    
T  35433585 atataaattttagtataaataatttgttaacgtatcttaaacgtatcgtatcctaattttaaaaattt 35433652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 1341787 - 1341729
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattca 78  Q
    ||||||||||||||||| | ||||||| ||||||||| ||| |||||| ||| ||||||    
T  1341787 atgaagggtaaaaaagttatattgtgttgtgaaaattcaatagagatgcatatgattca 1341729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 21858342 - 21858424
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 158  Q
    ||||||||||  |||||||||||    || |||||| |||| | ||||||||||| |||  ||||||||||||||||||||||    
T  21858342 tcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaatataa 21858424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 21842915 - 21842967
Alignment:
Q  252 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| || |||||||||||| ||||  |||||||||||| |||||    
T  21842915 ttttagtataaatattttgttaacgtatcttagttgtatcgtatcctgaattt 21842967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 24121416 - 24121460
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgta 289  Q
    |||||| |||||||||||| || |||||||||||| |||||||||    
T  24121416 atataaattttagtataaatattttgttaacgtatattagccgta 24121460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 47014278 - 47014330
Alignment:
Q  27 gtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    |||||||||||||| | ||| ||||||||| |||| ||||||||| |||||||    
T  47014278 gtaaaaaagtgagaatatgttgtgaaaattcaatgaagatgtatatgattcaa 47014330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 47014725 - 47014777
Alignment:
Q  252 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||| |||| || |||||||||||||| | |||||||||||||| |||||    
T  47014725 ttttagtgtaaatattttgttaacgtatttgatccgtatcgtatccttaattt 47014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 40217930 - 40217989
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  40217930 atataagttttagtataaatattttgttaacgtatcttagccgtatcgtatcctaaattt 40217989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 44746576 - 44746655
Alignment:
Q  77 caacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 156  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||||||||||  || ||||||||||||||| |||||    
T  44746576 caacattaaacaaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaatat 44746655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 34072778 - 34072711
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattt 312  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||||||||  |||| ||||||    
T  34072778 atataaattttagtataaatattttgttaacgtatcttagccgtatcgtatcctagttttaaaaattt 34072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 4776120 - 4776194
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtat 319  Q
    |||||||||||| ||||||||| || ||||||||||||||| | ||||||| ||||||||  |||||| ||||||    
T  4776120 atataagttttaatataaaaatattattaacgtattttagctgcatcgtattctaaattttaaaatttcgtgtat 4776194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 38947638 - 38947560
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 323  Q
    |||||| |||||||||||| || |||||||| ||| ||| |||||||||||||||| |||| ||||||||  |||||||    
T  38947638 atataaattttagtataaatattttgttaacatatcttaaccgtatcgtatcctaattttaaaaattttgcatatccgc 38947560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 22198983 - 22198927
Alignment:
Q  23 aagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||||||||| |||||| || ||||||||||| ||||||||| |||||||    
T  22198983 aagggtaaaaaagtgaggttgtgttgtaaaaattaaatgaagatgtatatgattcaa 22198927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 47724635 - 47724575
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||| |||||||||||| |  |||||||||||| |||||||||||||||||||| ||||    
T  47724635 atataaattttagtataaataatttgttaacgtatattagccgtatcgtatcctaatttta 47724575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 53586619 - 53586670
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatc 296  Q
    |||||||||||||||||||  | |||||||||||| ||||||||||||||||    
T  53586619 atataagttttagtataaattttttgttaacgtatcttagccgtatcgtatc 53586670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 42399349 - 42399402
Alignment:
Q  250 agttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatt 303  Q
    ||||||||| ||||||| ||||| |||||| |||| ||||||||||||||||||    
T  42399349 agttttagtttaaaaattttgttgacgtatcttagtcgtatcgtatcctaaatt 42399402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 22198627 - 22198567
Alignment:
Q  244 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||| || ||||||||| || ||||||||||| | |||| |||||    
T  22198627 tatataagttttagtataaatattttgttaacgcatcttagccgtatcttgtcctgaattt 22198567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 43770676 - 43770620
Alignment:
Q  23 aagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||||| |||||| ||||| ||||||||| |||| ||||||||| |||||||    
T  43770676 aagggtaaaaatgtgagactgtgttgtgaaaattcaatgaagatgtatatgattcaa 43770620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 6008436 - 6008495
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| ||||||  | ||||| | |||| ||||||||||||||||||||||||    
T  6008436 atataagttttaatataaattttttgtttaagtatcttagccgtatcgtatcctaaattt 6008495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 10037977 - 10037918
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    |||||||||||||||||||||   ||| | ||||||| |||||||||||||| |||||||    
T  10037977 atgaagggtaaaaaagtgagacaatgttgcgaaaattcaatggagatgtatatgattcaa 10037918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 45662034 - 45662073
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttag 284  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  45662034 atataagttttagtataaaaattttgttaacgtatcttag 45662073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 8486307 - 8486383
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatcc 321  Q
    |||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||| |||| |||||||| ||||||    
T  8486307 atataagttttagtataaaaaa-ttgttatcgtatcttagccgtatcgtatcctaaattttaaaaattttgcgtatcc 8486383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 12283529 - 12283467
Alignment:
Q  247 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 309  Q
    |||||||||||||||||||  |||||| | ||||||||||||||| |||||||||||| ||||    
T  12283529 ataagttttagtataaaaactttgttagcatattttagccgtatcatatcctaaatttttaaa 12283467  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 211433 - 211365
Alignment:
Q  252 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 320  Q
    ||||||||| |||||   ||| |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  211433 ttttagtattaaaattacgttcacgtatcttagccatattgtatcctaaatttataaattttgtgtatc 211365  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 2988018 - 2987959
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    ||||||| ||||||||||   | |||||||||||| ||||||||||||||||||||||||    
T  2988018 atataaggtttagtataatgtttttgttaacgtatcttagccgtatcgtatcctaaattt 2987959  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 30928614 - 30928676
Alignment:
Q  243 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||||||||||||| | ||| |||| ||||||||| |||| ||||| ||||||||    
T  30928614 atatataagttttagtataaaatttttgataacctattttagctgtatagtatcataaattta 30928676  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 12311850 - 12311793
Alignment:
Q  247 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||||||  || | ||||||||||||||||||  ||||||||||||    
T  12311850 ataagttttagtataaaaaaattttaaacgtattttagccgtattatatcctaaattt 12311793  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 6724422 - 6724351
Alignment:
Q  87 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataa 158  Q
    |||||||||| |||| ||||||||| |||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  6724422 caaactttgtattgagttcttttattgatgcatttgctgata-ctataacatacgaatgaaaatagaatataa 6724351  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 12283680 - 12283608
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaa 148  Q
    ||||||||||||||| ||||| |||||||||||||  ||||| | | ||||||||  || |||||||||||||    
T  12283680 tcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaaa 12283608  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 7495117 - 7495058
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 79  Q
    ||||||||| |||| |||| ||||||| ||||||||| |||||||||||| | |||||||    
T  7495117 atgaagggtgaaaaggtgatattgtgttgtgaaaattcaatggagatgtacatgattcaa 7495058  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 212070 - 212017
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatat 129  Q
    |||||||||| ||||||||||||| | ||||||||| ||||  |||||||||||    
T  212070 tcaacattaaacaaactttgtttttagttcttttattgatgtgtttgttgatat 212017  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 6724590 - 6724530
Alignment:
Q  20 atgaagggtaaaaaagtgagattgtgtcgtgaaaa-ttaaatggagatgtataagattcaa 79  Q
    ||||| ||||||||||||||  ||||| ||||||| || |||||||||||||| |||||||    
T  6724590 atgaatggtaaaaaagtgaggctgtgttgtgaaaatttcaatggagatgtatatgattcaa 6724530  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 7435056 - 7435112
Alignment:
Q  249 aagttttagtataaaaatctt-gttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||||||| | || |||||||||| |||  |||||||||||||||||||    
T  7435056 aagttttagtataaaattttttgttaacgtatcttactcgtatcgtatcctaaattt 7435112  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 17533203 - 17533143
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||| |||||||||||| || |||| ||||| | ||| |||||||||||||||| ||||    
T  17533203 atataaattttagtataaatattttgtcaacgtttcttaaccgtatcgtatcctaatttta 17533143  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 8997 - 9056
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 304  Q
    |||||||||||| ||||||||| ||||||| |||| ||| || |||||||||||||||||    
T  8997 atataagttttaatataaaaattttgttaatgtatattaaccttatcgtatcctaaattt 9056  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 38324 - 38264
Alignment:
Q  245 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 305  Q
    |||||||||||| ||||||||  |||||||||||| ||||||||||  |||||| ||||||    
T  38324 atataagttttaatataaaaaatttgttaacgtatcttagccgtattttatccttaattta 38264  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 394327 - 394379
Alignment:
Q  76 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgata 128  Q
    |||||||||| |||| |||||||||| ||||| ||| ||| ||||||||||||    
T  394327 tcaacattaaacaaattttgttttgagttcttgtattgatccatttgttgata 394379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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