View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14750_low_3 (Length: 475)

Name: NF14750_low_3
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14750_low_3
NF14750_low_3
[»] chr4 (13 HSPs)
chr4 (249-460)||(52606876-52607089)
chr4 (329-460)||(40413187-40413318)
chr4 (313-460)||(48316156-48316303)
chr4 (329-460)||(53560263-53560394)
chr4 (331-456)||(27301543-27301669)
chr4 (361-460)||(52632887-52632986)
chr4 (386-447)||(42150270-42150331)
chr4 (382-430)||(12865271-12865319)
chr4 (376-456)||(18910357-18910437)
chr4 (363-445)||(16492112-16492196)
chr4 (239-283)||(40413353-40413396)
chr4 (382-410)||(48684504-48684532)
chr4 (389-460)||(50500992-50501064)
[»] chr8 (4 HSPs)
chr8 (295-460)||(42035455-42035620)
chr8 (333-460)||(12949331-12949458)
chr8 (355-468)||(43345669-43345782)
chr8 (380-431)||(24964206-24964257)
[»] chr1 (7 HSPs)
chr1 (296-460)||(386590-386754)
chr1 (312-410)||(50011100-50011197)
chr1 (329-402)||(5806217-5806290)
chr1 (329-431)||(17180002-17180103)
chr1 (348-443)||(10462436-10462531)
chr1 (378-410)||(35395321-35395353)
chr1 (362-404)||(30674192-30674234)
[»] chr2 (8 HSPs)
chr2 (299-460)||(16803322-16803483)
chr2 (299-460)||(16842605-16842766)
chr2 (329-460)||(7293093-7293224)
chr2 (329-459)||(9367940-9368070)
chr2 (334-462)||(34510819-34510946)
chr2 (376-456)||(6150120-6150200)
chr2 (393-447)||(7136900-7136954)
chr2 (393-456)||(40772105-40772169)
[»] chr7 (16 HSPs)
chr7 (236-447)||(26811750-26811961)
chr7 (295-460)||(8232205-8232370)
chr7 (329-460)||(36250607-36250738)
chr7 (329-458)||(45948166-45948295)
chr7 (332-460)||(43988158-43988286)
chr7 (333-459)||(20949533-20949659)
chr7 (336-410)||(47159632-47159704)
chr7 (377-456)||(33800380-33800460)
chr7 (382-466)||(47421036-47421120)
chr7 (362-404)||(29005974-29006016)
chr7 (368-462)||(34708890-34708984)
chr7 (378-411)||(2735554-2735587)
chr7 (382-430)||(2735951-2735999)
chr7 (388-456)||(35594284-35594352)
chr7 (239-283)||(36250531-36250574)
chr7 (377-453)||(38958405-38958481)
[»] chr3 (5 HSPs)
chr3 (236-406)||(22977650-22977826)
chr3 (357-453)||(49032816-49032913)
chr3 (330-410)||(2032526-2032606)
chr3 (377-453)||(32263236-32263312)
chr3 (376-456)||(55006962-55007042)
[»] chr5 (5 HSPs)
chr5 (299-431)||(35206134-35206266)
chr5 (299-430)||(35210886-35211017)
chr5 (350-455)||(28613354-28613459)
chr5 (376-456)||(1199579-1199659)
chr5 (363-456)||(35112506-35112601)
[»] scaffold0114 (1 HSPs)
scaffold0114 (329-460)||(37690-37820)
[»] chr6 (1 HSPs)
chr6 (381-453)||(10546712-10546784)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 249 - 460
Target Start/End: Original strand, 52606876 - 52607089
Alignment:
Q  249 tttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatatctca-ttttcatagggatattttagtca 346  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||| |||| |||||||||||||||||     
T  52606876 tttttcgattattactaaaattataactttaaattccttgaaaaaaattataactttaaattagttatatatatcactttttatagggatattttagtct 52606975  T
Q  347 ttttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcc 446  Q
    ||||||| ||||||||||||| |||||||  ||||||| ||||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||||    
T  52606976 ttttattaaatataaatctttatttccttcaactatcattcataccaaacaattaaaaaatcatcacactttccactcactttcttttcattttctttcc 52607075  T
Q  447 tataacaatcattc 460  Q
    ||||||||||||||    
T  52607076 tataacaatcattc 52607089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 329 - 460
Target Start/End: Complemental strand, 40413318 - 40413187
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||||||||| ||||||| |||||||||    
T  40413318 atagggatgttttagtcattttattaaatttaaatctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactt 40413219  T
Q  429 tctcttcactttctttcctataacaatcattc 460  Q
    ||| ||||||||||||||||||||||||||||    
T  40413218 tcttttcactttctttcctataacaatcattc 40413187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 313 - 460
Target Start/End: Complemental strand, 48316303 - 48316156
Alignment:
Q  313 tatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcatta 412  Q
    |||||||| |||| | |||||||||| | |||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||      
T  48316303 tatatatcacattcttatagggatatgtcagtcattttattaaatataaatctttctttcctttcactttcactaataccaaacaactaaaaaatcatct 48316204  T
Q  413 cacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    ||||||  ||||||||||| ||||||||||||||| ||||||||||||    
T  48316203 cactttctactcactttctattcactttctttcctctaacaatcattc 48316156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 329 - 460
Target Start/End: Original strand, 53560263 - 53560394
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    |||||| ||||||| |||||||||| ||||||| |||||||||||||| | | |||||||||||||||| |||||||| |||  ||||||  |||| | |    
T  53560263 atagggttattttattcattttattaaatataactctttctttccttacattttcactcataccaaacatctaaaaaaccatctcactttctactctcat 53560362  T
Q  429 tctcttcactttctttcctataacaatcattc 460  Q
    ||| ||||||||||||||| ||||||||||||    
T  53560363 tctattcactttctttcctctaacaatcattc 53560394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 456
Target Start/End: Original strand, 27301543 - 27301669
Alignment:
Q  331 agggatattttagtcattttattga-atataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcacttt 429  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||  ||| |||| ||||||||||||||||| ||||||   |||||| |||| ||||    
T  27301543 agggatattttagtcattttattaacatataaatctttctttccttgcactctcacacataccaaacaactaaacaatcatcctactttttactctcttt 27301642  T
Q  430 ctcttcactttctttcctataacaatc 456  Q
    ||  |||||||||||||| ||||||||    
T  27301643 ctactcactttctttcctttaacaatc 27301669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 361 - 460
Target Start/End: Original strand, 52632887 - 52632986
Alignment:
Q  361 aatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    |||||||||||||||  ||| ||||| |||||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||||| ||||||||||||    
T  52632887 aatctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttccacccactttctattcactttctttcctctaacaatcattc 52632986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 42150270 - 42150331
Alignment:
Q  386 tcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 447  Q
    |||||||||||||||||||||||||  ||||||| | ||| ||||| ||||||||| |||||    
T  42150270 tcataccaaacaactaaaaaatcatctcactttttattcattttctattcactttcattcct 42150331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 12865271 - 12865319
Alignment:
Q  382 tcactcataccaaacaactaaaaaatcattacacttttcactcactttc 430  Q
    ||||| ||||||||||||||||||||||| | ||||| |||||||||||    
T  12865271 tcactaataccaaacaactaaaaaatcatcaaactttccactcactttc 12865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 18910437 - 18910357
Alignment:
Q  376 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    ||||||||||| | |||||||||||||| ||||||  || |||||||| |||||||  |||||||| |||||  |||||||    
T  18910437 atactatcacttaaaccaaacaactaaataatcatctcatttttcacttactttctactcactttcattccttcaacaatc 18910357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 16492112 - 16492196
Alignment:
Q  363 tctttctttcct--tatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttc 445  Q
    ||||||||||||  | |||| |||||| ||||||||||| || |||||||  |||||||  |||||||||| || ||||||||||    
T  16492112 tctttctttcctcttttactttcactcttaccaaacaaccaacaaatcatctcactttttcctcactttctttttactttctttc 16492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 40413396 - 40413353
Alignment:
Q  239 ggttatgtagtttttctattattactaaaattataactttaaatt 283  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  40413396 ggttatgtagttttt-tattattaataaaattataacttaaaatt 40413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 410
Target Start/End: Original strand, 48684504 - 48684532
Alignment:
Q  382 tcactcataccaaacaactaaaaaatcat 410  Q
    |||||||||||||||||||||||||||||    
T  48684504 tcactcataccaaacaactaaaaaatcat 48684532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 460
Target Start/End: Original strand, 50500992 - 50501064
Alignment:
Q  389 taccaaacaactaaa-aaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    ||||||||||| ||| |||||||  |||||||||||||||||||  | ||||||  |||| ||||||||||||    
T  50500992 taccaaacaaccaaataaatcatctcacttttcactcactttctacttactttcaatcctctaacaatcattc 50501064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 42035455 - 42035620
Alignment:
Q  295 ttataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaa 394  Q
    ||||||||||||||||| |||||||| | || |  |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||    
T  42035455 ttataactttaaattaggtatatatcaccttcttgtagggatattttagtcattttattaaatataaatctttctttccttctaccatcactcaaaccaa 42035554  T
Q  395 acaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  42035555 acaactaaaaaatcatcacactttccactcactttcttttcactttctttcctataacaatcattc 42035620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 333 - 460
Target Start/End: Complemental strand, 12949458 - 12949331
Alignment:
Q  333 ggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctc 432  Q
    |||||| |||||||||||||| |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||  ||||||  |||| ||||||     
T  12949458 ggatatattagtcattttattaaatataaatctttctttccttgcactttcattgataccaaacaactaaaaaatcatctcactttctactctctttcta 12949359  T
Q  433 ttcactttctttcctataacaatcattc 460  Q
    ||||||||||||||| ||||||||||||    
T  12949358 ttcactttctttcctctaacaatcattc 12949331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 468
Target Start/End: Complemental strand, 43345782 - 43345669
Alignment:
Q  355 aatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttc-tcttcactttctttcctataaca 453  Q
    |||||| ||||||||||| ||  ||| ||||||||||||||||   ||| ||||||  |||||| || |||||||| |||| |||||||||||| |||||    
T  43345782 aatatacatctttctttcttttcactttcactcataccaaacactcaaacaatcatcccactttccattcactttcctctt-actttctttcctttaaca 43345684  T
Q  454 atcattcatctcact 468  Q
    ||| ||| |||||||    
T  43345683 atctttcctctcact 43345669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 24964206 - 24964257
Alignment:
Q  380 tatcactcataccaaacaactaaaaaatcattacacttttcactcactttct 431  Q
    ||||||||| |||||||||||||| ||||||  |||||| ||||||||||||    
T  24964206 tatcactcaaaccaaacaactaaataatcatcccactttccactcactttct 24964257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 296 - 460
Target Start/End: Original strand, 386590 - 386754
Alignment:
Q  296 tataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaa 395  Q
    ||||||||||||||||||||||||| | || | ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||    
T  386590 tataactttaaattagttatatatcaccttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataacaaa 386689  T
Q  396 caactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    |||| ||||||||||  |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  386690 caaccaaaaaatcatcgcactttccactcactttcttttcactttctttcctataacaatcattc 386754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 410
Target Start/End: Original strand, 50011100 - 50011197
Alignment:
Q  312 ttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 410  Q
    ||||||||| | |||| |||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  50011100 ttatatatcacctttttatagggatattt-agtcattttaataaatataaatctttctttccttctactatcactcatagcaaacaactaaaaaatcat 50011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 5806217 - 5806290
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaa 402  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  5806217 atagggatattttagtcattttattaaatataaatctttctttccttccactttcactcataccaaacaactaa 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 17180103 - 17180002
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| ||   |||||||| ||||||||||||||||||||||| ||||||| || ||||||    
T  17180103 atagggatattttagtcattttattaaat-taaatatttctttcgtttccctatcacttataccaaacaactaaaaaatcatcacactttccattcactt 17180005  T
Q  429 tct 431  Q
    |||    
T  17180004 tct 17180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 443
Target Start/End: Original strand, 10462436 - 10462531
Alignment:
Q  348 tttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctt 443  Q
    |||||| |||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||| || ||| || ||| ||||| |||||||||||    
T  10462436 tttattaaatataaatcttactttccttccactttcactcataccaaacaactaaaaaatcattccattttccattcattttctattcactttctt 10462531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 35395353 - 35395321
Alignment:
Q  378 actatcactcataccaaacaactaaaaaatcat 410  Q
    |||||||||||||||||||||||||||||||||    
T  35395353 actatcactcataccaaacaactaaaaaatcat 35395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 30674234 - 30674192
Alignment:
Q  362 atctttctttccttatactatcactcataccaaacaactaaaa 404  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  30674234 atctttctttccttctactatccctcataccaaactactaaaa 30674192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 16803483 - 16803322
Alignment:
Q  299 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 398  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  16803483 aactttaaattagttatatatcaacttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataccaaacaa 16803384  T
Q  399 ctaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    |||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||    
T  16803383 ctaaaaaatcatcacactttccattcactttcttttcactttctttcttataacaatcattc 16803322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 16842766 - 16842605
Alignment:
Q  299 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 398  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  16842766 aactttaaattagttatatatcaacttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataccaaacaa 16842667  T
Q  399 ctaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    |||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||    
T  16842666 ctaaaaaatcatcacactttccattcactttcttttcactttctttcttataacaatcattc 16842605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 329 - 460
Target Start/End: Complemental strand, 7293224 - 7293093
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  7293224 atagggatattttagtcattttaataaatataaatatttctttccttctactatcactcataccaaacaactaaaaaatcatcgcactttccactcactt 7293125  T
Q  429 tctcttcactttctttcctataacaatcattc 460  Q
    ||| ||||||||||||||||||||||||||||    
T  7293124 tcttttcactttctttcctataacaatcattc 7293093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 329 - 459
Target Start/End: Original strand, 9367940 - 9368070
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||| |||| |||    
T  9367940 atagggttattttagtcattttattaaatataaatatttctttccttacactttcactcataccaaacaactaaaaaatcatctcactttttactctctt 9368039  T
Q  429 tctcttcactttctttcctataacaatcatt 459  Q
    ||| ||||||||||||||| |||||||||||    
T  9368040 tctattcactttctttcctctaacaatcatt 9368070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 34510819 - 34510946
Alignment:
Q  334 gatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctct 433  Q
    |||||||||||||||||||| ||||||||||||||||| |||   |||| | | |||||||||||||||||| |||| |||||||  ||||||||||| |    
T  34510819 gatattttagtcattttattaaatataaatctttcttttctttccctattatttataccaaacaactaaaaa-tcatcacactttctactcactttcttt 34510917  T
Q  434 tcactttctttcctataacaatcattcat 462  Q
    |||||||||||||||||||||||||||||    
T  34510918 tcactttctttcctataacaatcattcat 34510946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 6150200 - 6150120
Alignment:
Q  376 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||  |||||||    
T  6150200 atactatcactcaaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattccttcaacaatc 6150120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 7136954 - 7136900
Alignment:
Q  393 aaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 447  Q
    ||||||||||||||||||  ||||||| ||||||||||| | ||||||| |||||    
T  7136954 aaacaactaaaaaatcatctcactttttactcactttctatccactttcattcct 7136900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 40772105 - 40772169
Alignment:
Q  393 aaacaactaaaa-aatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    ||||||| |||| ||||||  |||||| || ||||||||||||||||||| ||||| ||||||||    
T  40772105 aaacaaccaaaataatcatctcactttccattcactttctcttcactttcattcctttaacaatc 40772169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 236 - 447
Target Start/End: Complemental strand, 26811961 - 26811750
Alignment:
Q  236 tacggttatgtagtttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatatctcattttcataggg 334  Q
    ||||||||| ||||||| | || ||||||||||| ||||||| |||||||||        ||||||||||||||||| |||||||| |||| | || |||    
T  26811961 tacggttatatagtttt-cgatcattactaaaatgataacttcaaattccttaaaaaaaattataactttaaattaggtatatatcacattcttatgggg 26811863  T
Q  335 atattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctctt 434  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| ||    
T  26811862 atattttagtcattttattaaatataaatctttctttccttctactatcactcataccaaataactaaaaaatcatcacacttctcactaactttctttt 26811763  T
Q  435 cactttctttcct 447  Q
    |||||||||||||    
T  26811762 cactttctttcct 26811750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 8232370 - 8232205
Alignment:
Q  295 ttataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaa 394  Q
    |||||| |||||||||  || ||||| | |||| ||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||    
T  8232370 ttataattttaaattatatacatatcacctttttatagggatattttagtcattttattaaatataaatctttcattcctttcactatcactcataccaa 8232271  T
Q  395 acaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 460  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||    
T  8232270 acaactaaaaaatcattagattttccactcactttcttttcactttctttcctataacaatcattc 8232205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 329 - 460
Target Start/End: Original strand, 36250607 - 36250738
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||||||||| ||||||| |||||||||    
T  36250607 atagggatgttttagtcattttattaaatttaaatctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactt 36250706  T
Q  429 tctcttcactttctttcctataacaatcattc 460  Q
    ||| ||||||||||||||||||||||||||||    
T  36250707 tcttttcactttctttcctataacaatcattc 36250738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 329 - 458
Target Start/End: Original strand, 45948166 - 45948295
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||| | || ||||| |||||||||||||||||| |||| |||||||||||||||||    
T  45948166 atagggatattttagtcattttattaaatataaatcttttttcccttttcctgtcacttataccaaacaactaaaaattcatcacacttttcactcactt 45948265  T
Q  429 tctcttcactttctttcctataacaatcat 458  Q
    | | || |||||||||||||||||||||||    
T  45948266 tttttttactttctttcctataacaatcat 45948295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 332 - 460
Target Start/End: Complemental strand, 43988286 - 43988158
Alignment:
Q  332 gggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttct 431  Q
    ||||||||| |||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||  |||||| ||| ||||||||    
T  43988286 gggatatttcagtcattttattaaatataaatctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttccacccactttct 43988187  T
Q  432 cttcactttctttcctataacaatcattc 460  Q
     ||||||||||||||| ||||||||||||    
T  43988186 attcactttctttcctctaacaatcattc 43988158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 333 - 459
Target Start/End: Complemental strand, 20949659 - 20949533
Alignment:
Q  333 ggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctc 432  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||||||   ||| ||||||     
T  20949659 ggatattttagtcattttattaaatataaatctttctttccttacactttcattgataccaaacaactaaaaaatcatttcactttctgctctctttcta 20949560  T
Q  433 ttcactttctttcctataacaatcatt 459  Q
    ||||||||||||||| |||||||||||    
T  20949559 ttcactttctttcctttaacaatcatt 20949533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 47159704 - 47159632
Alignment:
Q  336 tattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 410  Q
    |||||||||||||||||| |||||||||||  ||||||||   |||||||| |||||||||||||||||||||||    
T  47159704 tattttagtcattttattaaatataaatct--ctttcctttctctatcacttataccaaacaactaaaaaatcat 47159632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 33800460 - 33800380
Alignment:
Q  377 tactatcactcataccaaacaactaaaa-aatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    |||| |||||| || ||||||||||||| ||||||  |||||| || ||||||||||||||||||| ||||| ||||||||    
T  33800460 tactttcactcctaacaaacaactaaaacaatcatctcactttccattcactttctcttcactttcattcctttaacaatc 33800380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 47421036 - 47421120
Alignment:
Q  382 tcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattcatctca 466  Q
    |||||||||||||||||||||||||||||  |||||| || ||||||||| | ||||| | |||||  ||||||| ||| |||||    
T  47421036 tcactcataccaaacaactaaaaaatcatctcactttccattcactttctatacacttccattccttcaacaatctttcctctca 47421120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 29005974 - 29006016
Alignment:
Q  362 atctttctttccttatactatcactcataccaaacaactaaaa 404  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  29005974 atctttctttccttctactatctctcataccaaactactaaaa 29006016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 462
Target Start/End: Original strand, 34708890 - 34708984
Alignment:
Q  368 ctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattcat 462  Q
    ||||||| ||||||||||| | ||||||||| |||| ||||||  || ||| |||| ||||||| ||||||||| ||| |  ||||||| |||||    
T  34708890 ctttcctcatactatcacttaaaccaaacaattaaataatcatctcattttccacttactttctattcactttcattcattcaacaatctttcat 34708984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 2735587 - 2735554
Alignment:
Q  378 actatcactcataccaaacaactaaaaaatcatt 411  Q
    |||||||||||||||||||||| |||||||||||    
T  2735587 actatcactcataccaaacaaccaaaaaatcatt 2735554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 2735999 - 2735951
Alignment:
Q  382 tcactcataccaaacaactaaaaaatcattacacttttcactcactttc 430  Q
    |||||||||||||||||| ||||||||||   ||||| |||||||||||    
T  2735999 tcactcataccaaacaaccaaaaaatcatctaactttccactcactttc 2735951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 35594284 - 35594352
Alignment:
Q  388 ataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    |||||||||||||||| ||||||   |||||   ||||||||||||| ||||||||||||  |||||||    
T  35594284 ataccaaacaactaaataatcatcctactttcttctcactttctcttaactttctttccttcaacaatc 35594352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 36250531 - 36250574
Alignment:
Q  239 ggttatgtagtttttctattattactaaaattataactttaaatt 283  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  36250531 ggttatgtagttttt-tattattaataaaattataacttaaaatt 36250574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 38958481 - 38958405
Alignment:
Q  377 tactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 453  Q
    |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| |||||    
T  38958481 tactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaca 38958405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 236 - 406
Target Start/End: Original strand, 22977650 - 22977826
Alignment:
Q  236 tacggttatgtagtttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatat-----ctcattttca 329  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| |||        |||||||||||||||||||||||||     | | || |||    
T  22977650 tacggttatgtagtttttcgattcttattaaaattataactttaaattgcttgaaaaaaattataactttaaattagttatatataatatcaccttctca 22977749  T
Q  330 tagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaa 406  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  22977750 tagggatattttagtcattttattaaatataaatctttctttccttctactatcactcataccaaacaaataaaaaa 22977826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 453
Target Start/End: Original strand, 49032816 - 49032913
Alignment:
Q  357 tataaatctttctttccttat-actatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 453  Q
    |||| |||||||||||||  | ||| |||| | ||||||||||||||| ||||||  |||||| |||||||||||| ||||||||| ||||| |||||    
T  49032816 tatatatctttctttcctcttcactttcacccctaccaaacaactaaacaatcatctcactttccactcactttctattcactttcattcctttaaca 49032913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 2032606 - 2032526
Alignment:
Q  330 tagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 410  Q
    |||||||||||||||| ||||||| || ||   ||||||||||||| |||| | |||  ||||||||||||||| ||||||    
T  2032606 tagggatattttagtccttttattaaacatgtctctttctttccttttactttaacttctaccaaacaactaaataatcat 2032526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 32263312 - 32263236
Alignment:
Q  377 tactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 453  Q
    |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| |||||    
T  32263312 tactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaca 32263236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 55006962 - 55007042
Alignment:
Q  376 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    |||||||| |||| |||||||||||||| ||||||  |||||| || |||||||||  ||| |||| |||||  |||||||    
T  55006962 atactatctctcaaaccaaacaactaaataatcatctcactttccattcactttctactcattttcattccttcaacaatc 55007042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 299 - 431
Target Start/End: Complemental strand, 35206266 - 35206134
Alignment:
Q  299 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 398  Q
    |||||||||||||||||||||| | || | ||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||    
T  35206266 aactttaaattagttatatatcaccttcttatagggatattttagtcattttaataaatataaatttttctttccttctattatcattcataccaaacaa 35206167  T
Q  399 ctaaaaaatcattacacttttcactcactttct 431  Q
    |||||||||||| ||||||| ||||||||||||    
T  35206166 ctaaaaaatcatcacactttccactcactttct 35206134  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 299 - 430
Target Start/End: Original strand, 35210886 - 35211017
Alignment:
Q  299 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 398  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||    
T  35210886 aactttaaattagttatatatcatcttcttatagggatattttagtcattttaataaatataaatttttctttccttctattatcattcataccaaacaa 35210985  T
Q  399 ctaaaaaatcattacacttttcactcactttc 430  Q
    |||||||||||| ||||||| |||||||||||    
T  35210986 ctaaaaaatcatcacactttccactcactttc 35211017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 455
Target Start/End: Original strand, 28613354 - 28613459
Alignment:
Q  350 tattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctat 449  Q
    |||| ||||||||| |||||||||||  ||| ||  |||||||||||||||||||||||||   |||||||| ||||||||| ||||||||| ||||| |    
T  28613354 tattaaatataaatatttctttcctttcactttctgtcataccaaacaactaaaaaatcatcttacttttcattcactttctattcactttcattccttt 28613453  T
Q  450 aacaat 455  Q
    ||||||    
T  28613454 aacaat 28613459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 1199579 - 1199659
Alignment:
Q  376 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||  |||||||    
T  1199579 atactatcactcaaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattccttcaacaatc 1199659  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 35112506 - 35112601
Alignment:
Q  363 tctttctttcct--tatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 456  Q
    ||||||||||||  | |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| ||||||||    
T  35112506 tctttctttcctcttttactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaacaatc 35112601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 329 - 460
Target Start/End: Complemental strand, 37820 - 37690
Alignment:
Q  329 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 428  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||  |||||||||||||||||||| | |||||||||| ||||||| |||||||||    
T  37820 atagggatattttagtcattttattaaatataaatctttattttctttcactatcactcataccaaacagcaaaaaaatcatcacactttacactcactt 37721  T
Q  429 tctcttcactttctttcctataacaatcattc 460  Q
    | | ||||||||||||||||||||||||||||    
T  37720 t-ttttcactttctttcctataacaatcattc 37690  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 10546784 - 10546712
Alignment:
Q  381 atcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 453  Q
    |||||||| |||||||||||| ||||||||| |||||   ||||| ||||| | ||||||| ||||| |||||    
T  10546784 atcactcaaaccaaacaactagaaaatcatttcacttactactcaatttctatccactttcattcctttaaca 10546712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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