View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14750_low_4 (Length: 474)
Name: NF14750_low_4
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14750_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 25882986 - 25882617
Alignment:
| Q |
19 |
aagagatacatacaaacaaacataaacacaaaatgtaaaggaattgattgaactgattacctctaagagcattagccaaattgccattagaaacaaaatc |
118 |
Q |
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| T |
25882986 |
aagagatacatacaaacaaacataaacacaaaatgtaaaggaattgattgaactgattacctctaagagcattagccaaattgccattagaaacaaaatc |
25882887 |
T |
|
| Q |
119 |
actgatcaaaagcttttcatcatgagcccaataataagctcttaacttaacaatattaggatgtttcactttcccaattgcttgaacttcagtagcaaat |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25882886 |
actaatcaaaagcttttcatcatgagcccaataataagctcttaacttaacaatattaggatgtttcactttcccaattgcttgaacttcagtagcaaat |
25882787 |
T |
|
| Q |
219 |
tccttatacctttgttcaccaccttcccctaatctcctcacagctacaggtaccccattcccaagcactaccttatacacaatccctaacccacttttcc |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25882786 |
tccttatacctttgttcaccaccttcccccaatctcctcacagctacaggtaccccattcccaagcactaccttatacacaatccctaacccacttttcc |
25882687 |
T |
|
| Q |
319 |
ctaacacatatgcagaagctcttaacaattcatcaagttcaaagctaaaacctttatcaattgccaccaa |
388 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25882686 |
ctaacacatatgcagaagcccttaacaattcatcaagttcaaagctaaaacctttatcaattgccaccaa |
25882617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 95 - 388
Target Start/End: Original strand, 4031760 - 4032053
Alignment:
| Q |
95 |
caaattgccattagaaacaaaatcactgatcaaaagcttttcatcatgagcccaataataagctcttaacttaacaatattaggatgtttcactttccca |
194 |
Q |
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|||||||||||| |||| ||||||||| || | ||||||||||||||| ||||||||||||||||| ||| | |||||||||||||| || || |||||| |
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| T |
4031760 |
caaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcacaatattaggatgcttaaccttccca |
4031859 |
T |
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| Q |
195 |
attgcttgaacttcagtagcaaattccttatacctttgttcaccaccttcccctaatctcctcacagctacaggtaccccattcccaagcactaccttat |
294 |
Q |
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|| | ||| || |||| |||| ||||||||| | | ||| ||||| ||||||||||||||||| || || || | |||||| |||||||| ||||||| |
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| T |
4031860 |
atggtttgcacctcagctacaaactccttatacttctcttctccaccctcccctaatctcctcaccgccaccggcatcccatttccaagcaccaccttat |
4031959 |
T |
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| Q |
295 |
acacaatccctaacccacttttccctaacacatatgcagaagctcttaacaattcatcaagttcaaagctaaaacctttatcaattgccaccaa |
388 |
Q |
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||||||||||||| |||| ||||||||||||||||| || || | || | |||||||| |||| ||||||||||| ||||||| |||||| |
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| T |
4031960 |
acacaatccctaatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacctttgtcaattgtcaccaa |
4032053 |
T |
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