View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14750_low_5 (Length: 454)
Name: NF14750_low_5
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14750_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 28734017 - 28734451
Alignment:
| Q |
18 |
aattctactattggtaacaagatgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggag |
117 |
Q |
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| T |
28734017 |
aattctactattggtaacaagatgagttcaccttattcagaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggag |
28734116 |
T |
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| Q |
118 |
tgttgtggaagaagaatcatcaatagatagatatatgcaaggttgcgtaactatgtataatatgcttctttacattcttgttagttaccatgttgagtaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
28734117 |
tgttgtggaagaagaatcatcaatagatagatatatgcaaggttgcgtaactatgtataatatgcttctttacgttcttgttaattaccatgttgagtaa |
28734216 |
T |
|
| Q |
218 |
atgctttaactcatgtttgattgtacttgtttgctttatattattatatgttgggcatcctctggtttgatcaccattcaaacaatccttggagaatatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28734217 |
atgctttaactcatgtttgattgtacttgtttgctttatattattatatgttgggcatcctctggtttgatcaccattcaaacaatccttggagaatatt |
28734316 |
T |
|
| Q |
318 |
tgccttaacaaagtagtgtcacaaatgttttgaagatacattgttttgatcacattttgttctttctg--------------ttttacattatcttgttc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
28734317 |
tgccttaacaaagtagtgtcacaaatgttttgaagatacattgttttgatcacattttgctcttcctgttttacatttttttttttacattatcttgttc |
28734416 |
T |
|
| Q |
404 |
ttccattaaaattaagggaaataacagcatgattg |
438 |
Q |
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| T |
28734417 |
ttccattaaaattaagggaaataacagcatgattg |
28734451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 22110965 - 22111065
Alignment:
| Q |
39 |
atgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtggaagaagaatcatc |
138 |
Q |
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|||| |||||| |||| ||||| || |||||||| || || ||||||||||| | || |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
22110965 |
atgaattcaccctatttagaagacacggatgatgagtccccaaagaagaaaaacaaaaacatgctgaagaagattggagtgttgtggaggaagaatcatc |
22111064 |
T |
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| Q |
139 |
a |
139 |
Q |
| |
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| T |
22111065 |
a |
22111065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 40583624 - 40583524
Alignment:
| Q |
39 |
atgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtggaagaagaatcatc |
138 |
Q |
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|||| |||||| |||| ||||| || |||||||| || || ||||||||||| | || |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
40583624 |
atgaattcaccctatttagaagacacggatgatgagtccccaaagaagaaaaacaaaaacatgctgaagaagattggagtgttgtggaggaagaatcatc |
40583525 |
T |
|
| Q |
139 |
a |
139 |
Q |
| |
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| |
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| T |
40583524 |
a |
40583524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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