View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14750_low_7 (Length: 378)
Name: NF14750_low_7
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14750_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 35108109 - 35108473
Alignment:
| Q |
1 |
tggttcgcacctcaacttaacaatattgaaggcttcaacggttgtacaaaccttgcctgaaaggtatctgttctagagtcatagcaaacgtcagcatcat |
100 |
Q |
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| T |
35108109 |
tggttggcacctaaactcaacaatattgaaggagtcaactgttgcacataccttgcttgaaaggtatctgttctagagtcatagcaaagttcagcatcat |
35108208 |
T |
|
| Q |
101 |
aacatgagagcaggtatccagcatgaccattctgaaaatgtaattaaaatgtcaaaaaattaagtaacaaaatcccttaattacaagacagaatgttaat |
200 |
Q |
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| T |
35108209 |
aacatgagagcaggaatccagcatgaccattctgaaaatgtaattaaaatgtcaaaaaattaagtaacaaaatcccttaattacaagacagaatgttaat |
35108308 |
T |
|
| Q |
201 |
tagtactaatttttaaatcagggattaattatgaaaataattactactaaaatctgcatgcaaccaataattacctcacggttataaacttgagcaggga |
300 |
Q |
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| T |
35108309 |
tagtactaatttttaaatcagggattaattatgaaaataattactactaaaatctgcatgcaaccaataattacctcacggttataaacttgagcaggga |
35108408 |
T |
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| Q |
301 |
accaaaattttccattctcaagagaaagataaagagcagcaattgagtcatctggccttgacttt |
365 |
Q |
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| T |
35108409 |
accaaaattttccattctcaagagaaagataaagagcagcaattgagtcatctggccttgacttt |
35108473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 38728658 - 38728718
Alignment:
| Q |
271 |
ttacctcacggttataaacttgagcagggaaccaaaattttccattctcaagagaaagata |
331 |
Q |
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| T |
38728658 |
ttacctcacggttataaacttgagcaggaaaggaaaaattgccagtctcaagagcaagata |
38728718 |
T |
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