View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14750_low_9 (Length: 262)

Name: NF14750_low_9
Description: NF14750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14750_low_9
NF14750_low_9
[»] chr3 (30 HSPs)
chr3 (10-242)||(11159925-11160157)
chr3 (10-228)||(8861229-8861447)
chr3 (10-228)||(10889249-10889467)
chr3 (10-235)||(11130934-11131159)
chr3 (10-235)||(11148762-11148987)
chr3 (10-227)||(10375753-10375970)
chr3 (10-227)||(10126872-10127089)
chr3 (10-222)||(10363706-10363918)
chr3 (19-219)||(10433961-10434161)
chr3 (10-227)||(9838805-9839022)
chr3 (10-227)||(9849683-9849900)
chr3 (10-227)||(11769178-11769395)
chr3 (10-210)||(13170992-13171192)
chr3 (10-210)||(13332865-13333065)
chr3 (47-222)||(10088739-10088914)
chr3 (47-222)||(10195622-10195797)
chr3 (10-227)||(10663470-10663687)
chr3 (47-227)||(10031947-10032127)
chr3 (10-210)||(13344050-13344250)
chr3 (10-219)||(10077221-10077430)
chr3 (10-207)||(13289629-13289826)
chr3 (10-222)||(10260647-10260859)
chr3 (88-228)||(10517407-10517547)
chr3 (19-227)||(10580545-10580753)
chr3 (10-210)||(13160941-13161141)
chr3 (10-220)||(10184193-10184403)
chr3 (92-228)||(10527280-10527416)
chr3 (92-228)||(11781993-11782129)
chr3 (152-228)||(10500499-10500575)
chr3 (10-72)||(11153681-11153743)
[»] chr2 (1 HSPs)
chr2 (10-227)||(26906841-26907058)
[»] scaffold0002 (2 HSPs)
scaffold0002 (10-210)||(135796-135996)
scaffold0002 (10-210)||(145847-146047)
[»] chr4 (1 HSPs)
chr4 (88-228)||(17852930-17853070)
[»] chr8 (2 HSPs)
chr8 (92-227)||(11484961-11485096)
chr8 (92-228)||(44957699-44957835)
[»] chr1 (1 HSPs)
chr1 (84-218)||(825861-825995)
[»] chr7 (1 HSPs)
chr7 (10-229)||(29836585-29836804)
[»] chr6 (1 HSPs)
chr6 (45-213)||(31679676-31679844)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 11159925 - 11160157
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  11159925 tcgaagaaaatcaagattattggtttcccaagctcttgaagtgacagattcaagaagagttttagttacagataaaatatcaaaatcctcagatacacaa 11160024  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11160025 gcccatgctttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaa 11160124  T
Q  210 caacgcctatattgttattgccagtgttactct 242  Q
    |||||||||||||||||||||||||| ||||||    
T  11160125 caacgcctatattgttattgccagtgctactct 11160157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 8861447 - 8861229
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  8861447 tcgaagaaaatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacagttgaaatatcaaaatcctctgatacacaa 8861348  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8861347 gcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaa 8861248  T
Q  210 caacgcctatattgttatt 228  Q
    |||| || |||||||||||    
T  8861247 caacaccgatattgttatt 8861229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 10889467 - 10889249
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10889467 tcgaagaaaatctagattattgttttcccaagctcttgaagtcacagattcaagaagagttttagttacagttaaaatatcaaaatcctcagatacacaa 10889368  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10889367 gcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaa 10889268  T
Q  210 caacgcctatattgttatt 228  Q
    |||| || |||||||||||    
T  10889267 caacaccgatattgttatt 10889249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 11130934 - 11131159
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||    
T  11130934 tcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaa 11131033  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||||||||| | ||||||||| |||||||||||||||| ||||||| ||| ||||||||| || ||||| |||||||||||||||||||| |||||||    
T  11131034 gcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaa 11131133  T
Q  210 caacgcctatattgttattgccagtg 235  Q
    |||| || ||||||||||||| ||||    
T  11131134 caacaccgatattgttattgctagtg 11131159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 11148762 - 11148987
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||    
T  11148762 tcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaa 11148861  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||||||||| | ||||||||| |||||||||||||||| ||||||| ||| ||||||||| || ||||| |||||||||||||||||||| |||||||    
T  11148862 gcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaa 11148961  T
Q  210 caacgcctatattgttattgccagtg 235  Q
    |||| || ||||||||||||| ||||    
T  11148962 caacaccgatattgttattgctagtg 11148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 10375753 - 10375970
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| | ||||| | |||||||||||| |||||||| ||||  || |||||  | |||||||||||||||||||| ||||||    
T  10375753 tcgaaggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaa 10375852  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    |||||||| || |||||||| || | |||||||||||||| ||||||||||||||||||||| || ||||| || | ||||||||| || || |||||||    
T  10375853 gcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 10375952  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||| ||||    
T  10375953 caacacctatattattat 10375970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 10127089 - 10126872
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| | ||||||| | | ||||||||||||||||| ||||  || |||||  | | |||||||||||||||||| ||||||    
T  10127089 tcgaaggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaa 10126990  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||||| || |||||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  10126989 acccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcccaaacctcccatgcccaaaattgcaa 10126890  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||| ||||    
T  10126889 caacacctatattattat 10126872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 10363706 - 10363918
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| ||||| ||| | | |||||| |||||||||| ||||  || |||||  | | |||||||||||||||||| ||||||    
T  10363706 tcgaaggacatcaagattattgctttccgaagttatggaagtggcagattcaaggagagactttgttactctcataatatcaaaatcctcagagacacaa 10363805  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||||| || |||||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| ||||| |||||||    
T  10363806 acccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaa 10363905  T
Q  210 caacgcctatatt 222  Q
    |||| ||||||||    
T  10363906 caacacctatatt 10363918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 10433961 - 10434161
Alignment:
Q  19 atcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaagcccatgct 118  Q
    ||||||||||||| | ||||||| ||| |||||||| |||||||| ||||  || |||||  | |||||||||||||||| ||| ||||||||||| ||     
T  10433961 atcaagattattgctatcccaagttctggaagtgaccgattcaaggagagacttggttactttcaaaatatcaaaatcctgagacacacaagcccaggcc 10434060  T
Q  119 ttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaacgccta 218  Q
    || |||||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| ||||| ||||||||||| ||||    
T  10434061 ttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacaccta 10434160  T
Q  219 t 219  Q
    |    
T  10434161 t 10434161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 9839022 - 9838805
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| | ||||| | | | |||||||| |||||||| ||||  || |||||  | |||||||||||||||||||| ||||||    
T  9839022 tcgaaggacatcaagattattgctatcccatgttatggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaa 9838923  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||| ||  | | |||||| || | |||||||| ||||| ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  9838922 gcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 9838823  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||||||||    
T  9838822 caacacctatattgttat 9838805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 9849900 - 9849683
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| | ||||| | | | |||||||| |||||||| ||||  || |||||  | |||||||||||||||||||| ||||||    
T  9849900 tcgaaggacatcaagattattgctatcccatgttatggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaa 9849801  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||| ||  | | |||||| || | |||||||| ||||| ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  9849800 gcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 9849701  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||||||||    
T  9849700 caacacctatattgttat 9849683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 11769395 - 11769178
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| ||||||||||||||| | ||||||| |||||||||||| |||||||| ||||   | |||||  | | |||||||||||||||||| || |||    
T  11769395 tcgaaggatatcaagattattgctatcccaagttcttgaagtgaccgattcaaggagagacctggttactctcataatatcaaaatcctcagacacgcaa 11769296  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    |||||||| || |||||||| |  | |||||||| || || |||||| |||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  11769295 gcccatgccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 11769196  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||| ||||    
T  11769195 caacacctatattattat 11769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 13171192 - 13170992
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||| |||  |||||||||||  | | |||||| |||||||| |||||||||    
T  13171192 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 13171093  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||||    
T  13171092 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaa 13170993  T
Q  210 c 210  Q
    |    
T  13170992 c 13170992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 13333065 - 13332865
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||| |||  |||||||||||  | | |||||| |||||||| |||||||||    
T  13333065 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 13332966  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||||    
T  13332965 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaa 13332866  T
Q  210 c 210  Q
    |    
T  13332865 c 13332865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 10088914 - 10088739
Alignment:
Q  47 gaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaacttttt 146  Q
    ||||||||||||||||| ||||  || |||||  | | |||||||||||||||||| |||||| ||||||| || |||||||| || | |||||||| ||    
T  10088914 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctt 10088815  T
Q  147 catgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaacgcctatatt 222  Q
     || ||||||||||||||| ||||| || ||||| || | ||||||||| ||||| ||||||||||| ||||||||    
T  10088814 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatatt 10088739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 10195797 - 10195622
Alignment:
Q  47 gaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaacttttt 146  Q
    ||||||||||||||||| ||||  || |||||  | | |||||||||||||||||| |||||| ||||||| || |||||||| || | |||||||| ||    
T  10195797 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctt 10195698  T
Q  147 catgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaacgcctatatt 222  Q
     || ||||||||||||||| ||||| || ||||| || | ||||||||| ||||| ||||||||||| ||||||||    
T  10195697 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatatt 10195622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 10663687 - 10663470
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||  ||| | ||||||| | | ||||||||||||||||| ||||  || |||||  | | |||||||||||||||||| ||||||    
T  10663687 tcgaaggacatcaagatctttgctatcccaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaa 10663588  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||||| || |||||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  10663587 acccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 10663488  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||| ||||    
T  10663487 caacacctatattattat 10663470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 10032127 - 10031947
Alignment:
Q  47 gaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaacttttt 146  Q
    ||||||||||||||||| ||||  || |||||  | | |||||||||||||||||| ||||||||||| || || |||||||| || | |||||||| ||    
T  10032127 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctt 10032028  T
Q  147 catgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaacgcctatattgttat 227  Q
     || ||||||||||||||| ||||| || ||||| || | ||||||||| || || ||||||||||| |||||||| ||||    
T  10032027 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 10031947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 13344250 - 13344050
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||| |||  |||||||| ||  | | |||||| |||||||| |||||||||    
T  13344250 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagtgactctcagaatatcgaaatcctccgatacacaa 13344151  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||||    
T  13344150 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaa 13344051  T
Q  210 c 210  Q
    |    
T  13344050 c 13344050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 10077430 - 10077221
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | |||||||| |||||| ||||||| ||| |||||||  |||||||| ||||  || |||||  | | |||||||||||||||||| ||||||    
T  10077430 tcgaaggacatcaagatcattgttatcccaagttctagaagtgatcgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaa 10077331  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    |||||||| |  |||||||| || | | ||||||| | || ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  10077330 gcccatgcctgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 10077231  T
Q  210 caacgcctat 219  Q
    |||| |||||    
T  10077230 caacacctat 10077221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 13289826 - 13289629
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||  ||||||||||||| |||| | | |||||||||||||||||||| |||  |||||||||||  | |||||||| |||||||| |||||||||    
T  13289826 tcgaagagaatcaagattattgctttcaccacctcttgaagtgacagattcatgaatggttttagttactctcaaaatatcgaaatcctccgatacacaa 13289727  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgc 207  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||    
T  13289726 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgc 13289629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 10260859 - 10260647
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| || |||||||||||| | ||||||  ||| |||||||| |||||||| ||||  || |||||  | | |||||||||||||||||| ||||||    
T  10260859 tcgaaggatgtcaagattattgatatcccaatttctagaagtgactgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaa 10260760  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||| || || |  ||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  10260759 gcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 10260660  T
Q  210 caacgcctatatt 222  Q
    |||| ||||||||    
T  10260659 caacacctatatt 10260647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 10517547 - 10517407
Alignment:
Q  88 atcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgaca 187  Q
    |||||||||||||||||||||| |||| ||||| |||||||| || | || ||||||| ||| |||||||||||  |||||||| ||||||||||||||     
T  10517547 atcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattgtaaacaaactgtgcaagggtcgttttaccgacg 10517448  T
Q  188 cctcccatacctaatattgcaacaacgcctatattgttatt 228  Q
    ||||||||||| |  |||||| |||| |||| ||| |||||    
T  10517447 cctcccatacccacaattgcagcaacacctaaattattatt 10517407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 10580753 - 10580545
Alignment:
Q  19 atcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaagcccatgct 118  Q
    ||||||||||||| ||||| ||| | | ||||||||||||||||| ||||  || |||||  | | |||||||||||||||||| |||||| |||| ||     
T  10580753 atcaagattattgctttccgaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccacgcc 10580654  T
Q  119 ttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaacgccta 218  Q
    || |  ||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| || || ||||||||||| ||||    
T  10580653 ttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 10580554  T
Q  219 tattgttat 227  Q
    |||| ||||    
T  10580553 tattattat 10580545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 13161141 - 13160941
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||  ||||||||||||| |||| | ||||||||| |||||||||||| |||  |||||||||||  | | |||||| |||||||| |||||||||    
T  13161141 tcgaagagaatcaagattattgctttcgccagctcttgaggtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 13161042  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||||    
T  13161041 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaa 13160942  T
Q  210 c 210  Q
    |    
T  13160941 c 13160941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 10184403 - 10184193
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| | ||||||| | | ||||||||||||||||| ||||  || |||||  | | ||||||||||||||| || ||||||    
T  10184403 tcgaaggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggagagacttggttactctcataatatcaaaatcctcggacacacaa 10184304  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
    ||||| ||  | | |||||| || | |||||||| || || ||||||||||||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  10184303 gcccacgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 10184204  T
Q  210 caacgcctata 220  Q
    |||| ||||||    
T  10184203 caacacctata 10184193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 10527416 - 10527280
Alignment:
Q  92 aaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctc 191  Q
    |||||||| |||||| || |||| || || | |||||| || | || ||| ||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  10527416 aaatcctctgatacataaacccaggccttgagatcaaaatggtgttcaaccttttcatcattgtaaacaagttgtgcaagggttgttttaccgacacctc 10527317  T
Q  192 ccatacctaatattgcaacaacgcctatattgttatt 228  Q
    ||||||| || ||||||||||| |||| ||| |||||    
T  10527316 ccatacccaagattgcaacaacacctaaattattatt 10527280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 11781993 - 11782129
Alignment:
Q  92 aaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctc 191  Q
    |||||||| ||||||||| ||||  |||| |||||||| || | || ||||||  ||| |||||||||||| |||||||| |||||||||||||| ||||    
T  11781993 aaatcctccgatacacaaacccagactttgaaatcaaaatgttgttcaactttcacatcattgtaaacaagctgtgcaagggtcgttttaccgacgcctc 11782092  T
Q  192 ccatacctaatattgcaacaacgcctatattgttatt 228  Q
    ||||||| || ||||| ||||| |||| ||| |||||    
T  11782093 ccatacccaaaattgcgacaacacctaaattattatt 11782129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 10500575 - 10500499
Alignment:
Q  152 ttgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaacgcctatattgttatt 228  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||| |||| ||| |||||    
T  10500575 ttgtaaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatt 10500499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 11153681 - 11153743
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagtttt 72  Q
    |||||||| ||||||||| ||  ||||  | ||||||||||||||||||||||| ||||||||    
T  11153681 tcgaagaaaatcaagattgttactttcatatgctcttgaagtgacagattcaaggagagtttt 11153743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 26907058 - 26906841
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||| | ||||||||||||| | ||||||| ||| |||||||| |||||||| |||| ||| |||||  | | |||||||||||||||||| ||||||    
T  26907058 tcgaaggacatcaagattattggtatcccaagttctggaagtgaccgattcaaggagagatttggttactctcataatatcaaaatcctcagacacacaa 26906959  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||||| || |||||||| |||  |||||||| || || |||||||| |||||| ||||| || ||||| || | ||||||||| || || |||||||    
T  26906958 acccatgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaa 26906859  T
Q  210 caacgcctatattgttat 227  Q
    |||| |||||||| ||||    
T  26906858 caacacctatattattat 26906841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 135796 - 135996
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||| |||  |||||||||||  | | |||||| |||||||| |||||||||    
T  135796 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 135895  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||||    
T  135896 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaa 135995  T
Q  210 c 210  Q
    |    
T  135996 c 135996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 145847 - 146047
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||| |||  |||||||||||  | | |||||| |||||||| |||||||||    
T  145847 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 145946  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||| | |||||| || |||||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| || |||||||    
T  145947 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaa 146046  T
Q  210 c 210  Q
    |    
T  146047 c 146047  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 17852930 - 17853070
Alignment:
Q  88 atcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgaca 187  Q
    ||||||||| || ||||||||| |||| ||||| | |||||| || | || ||| ||||||| |||||||||||| |||||||| |||||||||||||||    
T  17852930 atcaaaatcttctgatacacaaacccaggctttgagatcaaaatgatgttcaaccttttcatcattgtaaacaagctgtgcaagggtcgttttaccgaca 17853029  T
Q  188 cctcccatacctaatattgcaacaacgcctatattgttatt 228  Q
    |||||||| || |||||||||||||| |||| |||||||||    
T  17853030 cctcccatccccaatattgcaacaacacctaaattgttatt 17853070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 11485096 - 11484961
Alignment:
Q  92 aaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctc 191  Q
    |||||||| ||||||||| |||||||||| | |||||| |||| || |||||||||||  |||||||||||||||||||| |||||||||||||| ||||    
T  11485096 aaatcctccgatacacaaacccatgctttgagatcaaaatgctgttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacgcctc 11484997  T
Q  192 ccatacctaatattgcaacaacgcctatattgttat 227  Q
    ||||| | || ||||||||||| |||| ||| ||||    
T  11484996 ccataaccaaaattgcaacaacacctaaattattat 11484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 44957699 - 44957835
Alignment:
Q  92 aaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctc 191  Q
    |||||||| ||||||||   ||||||||| | ||| || || | || |||||||  || |||||||||||||||||| || |||||||||||||||||||    
T  44957699 aaatcctctgatacacatatccatgctttgagatcgaaatgttgttcaacttttatatcattgtaaacaagttgtgcgagagtcgttttaccgacacctc 44957798  T
Q  192 ccatacctaatattgcaacaacgcctatattgttatt 228  Q
    ||||||||||  | |||||||| |||| ||| |||||    
T  44957799 ccatacctaaggtggcaacaacacctaaattattatt 44957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 825995 - 825861
Alignment:
Q  84 aaatatcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttacc 183  Q
    |||||||||||||||| |  |||||| ||||  |||| |||||||| ||||| | |||||| | || ||||||||||||| | |||||||||| ||||||    
T  825995 aaatatcaaaatcctcggtgacacaaacccagactttcaaatcaaaatgctcatcaactttcttatcattgtaaacaagtcgagcaagtgtcgatttacc 825896  T
Q  184 gacacctcccatacctaatattgcaacaacgccta 218  Q
     ||||||||   |||||| |||||||  |||||||    
T  825895 aacacctccatcacctaaaattgcaatcacgccta 825861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 29836804 - 29836585
Alignment:
Q  10 tcgaagaatatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaa 109  Q
    |||||||| |||||| |||||| | | |||  ||||||||||||||  |||||| |||| ||| |||||  | || ||||||||||| ||||| ||||||    
T  29836804 tcgaagaagatcaaggttattggtattccattctcttgaagtgacaacttcaaggagagatttggttactctcaacatatcaaaatcttcagacacacaa 29836705  T
Q  110 gcccatgctttaaaatcaaagtgctcttgaactttttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaa 209  Q
     ||||  |||  | |||||| || | || ||||| ||| || ||||| | |||| | || || ||||||||||||| ||||||||| |||   ||||| |    
T  29836704 acccagacttgtacatcaaaatgatttttaacttcttcctggttgtatataagtcgagcgagggtcgttttaccgatacctcccatgcctgtaattgcga 29836605  T
Q  210 caacgcctatattgttattg 229  Q
    | || |||||||| ||||||    
T  29836604 ctacacctatattattattg 29836585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 31679676 - 31679844
Alignment:
Q  45 ttgaagtgacagattcaagaagagttttagttacggttaaaatatcaaaatcctcagatacacaagcccatgctttaaaatcaaagtgctcttgaacttt 144  Q
    ||||||||| ||||||||| | |||| | |||||  | |||| |||||| || || || | |||| |||| ||||| | ||||||  | |||||||| |     
T  31679676 ttgaagtgatagattcaagtaaagttctggttaccctcaaaacatcaaactcttcggacagacaaacccaagcttttacatcaaaacgttcttgaacatc 31679775  T
Q  145 ttcatgattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaatattgcaacaac 213  Q
    || || |||||||| |||||| || || |  |||||||||||||||||||| || || |||| ||||||    
T  31679776 tttatcattgtaaagaagttgagctagggctgttttaccgacacctcccatgccgaaaattgaaacaac 31679844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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