View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_high_10 (Length: 380)
Name: NF14751_high_10
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 27873392 - 27873043
Alignment:
| Q |
13 |
atcattaaaacacaacaaagtacgatgattcaatttccacatagtccataaacaaaaaagtgaaatttcaattcctattaatcattgtgtacactttttc |
112 |
Q |
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| T |
27873392 |
atcattaaaacacaacaaagtacgatgattcaatttccacatagtccataaacaaaaaagtgaaatttcaattcctattaatcattgtgtacactttttc |
27873293 |
T |
|
| Q |
113 |
catcttttattttttaaaacctaagagaaaatttatattttcccgggaaacaaaaggaaaatacctgaaggtcaagacgtttttcccagccattaggaac |
212 |
Q |
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| T |
27873292 |
catcttttattttttaaaacctaagagaaaatttatattttcccgggaaacaaaaggaaaatacctgaaggtcaagacgtttttcccagccattaggaac |
27873193 |
T |
|
| Q |
213 |
ctgtaaatcaagatccaattcttgtgattcaattgaagaggacccaccaagcaagtctcttgtaatcagagccgttgatttctcaccatgagaatcattg |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27873192 |
ctgtaaatcaagatccaattcttgggattcaattgaagaggacccaccaagcaagtctcttgtaatcagagccgttgatttctcaccatgagaatcattg |
27873093 |
T |
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| Q |
313 |
ccaaccgttcgatgttgctcatctttgtatccaccaccacctagaaccct |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27873092 |
ccaaccgttcgatgttgctcatctttgtatccaccaccacctagaaccct |
27873043 |
T |
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