View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14751_high_13 (Length: 356)
Name: NF14751_high_13
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 43462470 - 43462809
Alignment:
| Q |
1 |
caattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttgtttggagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43462470 |
caattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaatttggaactacttcactttgtttggagaa |
43462569 |
T |
|
| Q |
101 |
atcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaagataatgcat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
43462570 |
atcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggagggaaattaagataatgcat |
43462669 |
T |
|
| Q |
201 |
cacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43462670 |
cacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgt |
43462769 |
T |
|
| Q |
301 |
ttgataggattgtgaaaagaggttactacgccgaacaaaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43462770 |
ttgataggattgtgaaaagaggttactacgccgaacaaaa |
43462809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 43453034 - 43453349
Alignment:
| Q |
4 |
ttttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttgtttggagaaatc |
103 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
43453034 |
ttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatc |
43453133 |
T |
|
| Q |
104 |
aaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaagataatgcatcac |
203 |
Q |
| |
|
|||| |||| | || |||||||| | ||| |||||||| |||||||| ||| ||||| ||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
43453134 |
aaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcac |
43453233 |
T |
|
| Q |
204 |
ttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttg |
303 |
Q |
| |
|
|| ||||||| |||||||||||||| |||||||||| |||||||||| | | |||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
43453234 |
ttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttg |
43453333 |
T |
|
| Q |
304 |
ataggattgtgaaaag |
319 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
43453334 |
acaggattgtggaaag |
43453349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University