View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_high_16 (Length: 310)
Name: NF14751_high_16
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 78 - 294
Target Start/End: Complemental strand, 109033 - 108817
Alignment:
| Q |
78 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttacccagta |
177 |
Q |
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| T |
109033 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttacccagta |
108934 |
T |
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| Q |
178 |
gcaaaacatctgtgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagttaacctct |
277 |
Q |
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| T |
108933 |
gcaaaacatctctgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagttaacctct |
108834 |
T |
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| Q |
278 |
aaattgttgaaattttt |
294 |
Q |
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| T |
108833 |
aaattgttgaaattttt |
108817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 90190 - 90095
Alignment:
| Q |
78 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttaccca |
174 |
Q |
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| T |
90190 |
aattcagtacaaattagcaattttgcataacaattaatctacagaagacacaaaaatagaggaaggtgc-aagtcatcatgacattcaagttaccca |
90095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 109126 - 109057
Alignment:
| Q |
13 |
atttgtaggactagccacatttaaagtttctgctatatatacttggccttattttagaaacacttaattcagta |
86 |
Q |
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| T |
109126 |
atttgtaggactagccacatttaaagttgctgctata----cttggccttattttagaaacacttgattcagta |
109057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 90058 - 89964
Alignment:
| Q |
176 |
tagcaaaacatctgtgaaaccatgttttgcatattggg-tccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagt |
269 |
Q |
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||||||||| || |||||||||||| || | || |||| |||||| || |||||| |||||||| || || || ||||||||||||||||||||| |
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| T |
90058 |
tagcaaaacctcagtgaaaccatgtgttacgtactggggtccagaggctgaatatgtgttaaaaggtacagaaataataaaagttatactgaagt |
89964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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