View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_11 (Length: 382)
Name: NF14751_low_11
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 138 - 364
Target Start/End: Complemental strand, 47583350 - 47583125
Alignment:
| Q |
138 |
tgttggtgtaaaataaatacaagatgtgaaatcaacagtggtgtcaaaaacttaaaaagcaagaatatattaactccgtactaggaaattttggttcagg |
237 |
Q |
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| T |
47583350 |
tgttgatgtaaaataaatacaagatgtgaaatcaacagtggtgtcaaaaacttaaaaagcatgaatatat-aactccgtactaggaaaatttggttcagg |
47583252 |
T |
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| Q |
238 |
attcagttcatgttattgagttgaaagcttcatcatcgtgcatctatcatcacttacctatatctatctctgtctctctgcttcatgtcgtgtcacaatt |
337 |
Q |
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| T |
47583251 |
attcagttcatgttattgagttgaaagcttcatcatcgtgcatctatcatcacttacctatatctatctctgtctctctgcttcatgtcgtgtcacaatt |
47583152 |
T |
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| Q |
338 |
cacaaacctgttacattacatttcatg |
364 |
Q |
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| T |
47583151 |
cacaaacctgttacattacatttcatg |
47583125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 47583452 - 47583347
Alignment:
| Q |
3 |
gcccaatattgacaatagtccaattaaattcttgttaagtgagatttaggttaacatgagttagcagcaattagtaacactgcatggcaactgacacgta |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583452 |
gcccaatattgacaatagtccaattaaattcttgttaagtgagatttaggttaacatgagttagcagcaattagtaacactgcatggcaactgacacgta |
47583353 |
T |
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| Q |
103 |
cctgtt |
108 |
Q |
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| T |
47583352 |
cctgtt |
47583347 |
T |
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