View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_17 (Length: 345)
Name: NF14751_low_17
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 9583261 - 9583580
Alignment:
| Q |
17 |
aaaaacgtcagtcacattgaactaaaccaacatatatttcattggtttttatgagaaaatactgcaaaaccaaatgagatagtttataaattgtttggat |
116 |
Q |
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| T |
9583261 |
aaaaacgtcaatcacattgaactaaaccaacatatatttcgttggtttttatgagaaaatactgcaaaaccaaatgagatagtttataaattgtttggat |
9583360 |
T |
|
| Q |
117 |
tgaaaattctccaatattaaacacataaaaataaaaatagaatggcttcttaattcttgaatttannnnnnnaattgaagaaaaa-caactaccttttac |
215 |
Q |
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| T |
9583361 |
tgaaaattctccaatattaaacacataaaaataaaaataaaatggcttcttaattcttgaatttatttttttaattgaagaaaaaccaactaccttttac |
9583460 |
T |
|
| Q |
216 |
gcggctgtgtaaaataatgtactccagctaggaggagagtaaaataacgaagaagcatcgccgttcatattcaacggcgcgtcgagttaatttcaacacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9583461 |
gcggctgtgtaaaataatgtactccagctaggaggagagtaaaataacgaagaagcatcgccgttcatattcaacggcgcgtcgagttaatttcaacacc |
9583560 |
T |
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| Q |
316 |
acgctcttgactttatttat |
335 |
Q |
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|||||||||||||||||||| |
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| T |
9583561 |
acgctcttgactttatttat |
9583580 |
T |
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