View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_18 (Length: 325)
Name: NF14751_low_18
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 50 - 325
Target Start/End: Original strand, 9453866 - 9454141
Alignment:
| Q |
50 |
gacatcatcaaaacaaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcctggagcctaaaagaaatcaaattgattgcatn |
149 |
Q |
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| T |
9453866 |
gacaacatcaatacgaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcctggagcctaaaagaaatcaaattgatgacata |
9453965 |
T |
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| Q |
150 |
nnnnnntatcattcaagtgttatgttatgaacttcaataactacacatctttcaatcaagcatagaacataccttggtaaatgccaaattgatgaggtaa |
249 |
Q |
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| T |
9453966 |
aaaaaatatcattcaagtgttatgttatgaacttcaataactacaggtctttcaatccagcatagaacataccttggtaaatgccaaattgatgaggtaa |
9454065 |
T |
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| Q |
250 |
gagagaaattgacctcctgttataagtaaaccattggtgcaaaccaatgctcctctaatcttagcaggggaagctt |
325 |
Q |
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| T |
9454066 |
gagagaaattgacctcctgttataagtaaaccattggtgcaaaccaatgctcctctaatcttagcaggggaagctt |
9454141 |
T |
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Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 9442614 - 9442879
Alignment:
| Q |
74 |
atagcggggattgctgccactccaagcatccaacgccatgttcctggagcctaaaagaaatcaaattgattgcatnnnnnnnta----tcattcaagtgt |
169 |
Q |
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| T |
9442614 |
atagcgggaatcgctgccaccccaagcatccaacgccatgtcccgggagcctaaaacaaatcaaattgatgacataaaaacaaaaatctcattcaagtgt |
9442713 |
T |
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| Q |
170 |
tatgttatgaa----cttcaataactacacatctttcaat--caagcatagaacataccttggtaaatgccaaattgatgaggtaagagagaaattgacc |
263 |
Q |
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| T |
9442714 |
tatgttatgaatgaacttcaataactacattgcttcaaatttcaatca---aacataccttggtaaatgccaaattgatgaggtaagagagaaattgacc |
9442810 |
T |
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| Q |
264 |
tcctgttataagtaaaccattggt-------gcaaaccaatgctcctctaatcttagcaggggaagctt |
325 |
Q |
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| T |
9442811 |
acctgttatgagtaaaccattggtgcaaacggcaaaccaatgctcctctaatcttagcaggggaagctt |
9442879 |
T |
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