View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_2 (Length: 587)
Name: NF14751_low_2
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 345 - 571
Target Start/End: Original strand, 20789348 - 20789572
Alignment:
| Q |
345 |
aaaagaagacacctagaccaaatcctttttaattatataaacaattttgcatccaataaaagaaa--gagttgtagcaaagccatactcaatgaaattgt |
442 |
Q |
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| T |
20789348 |
aaaacaagacacctagaccaaatcctttttaattatataaaag----taaatccaataaaagaaaaagagttgtagcaaagcaatactcgatgaaattgt |
20789443 |
T |
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| Q |
443 |
catattcgacagccttgttttttccaccacttttgtcgaacttggagacgagcaagtccaacaccattgaagaaacagcataacccaaacttaacagcgc |
542 |
Q |
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| T |
20789444 |
catattcgacggctttgtttttgccaccagttttgtcaaacttggagacgagcaagtccaataccacaggagaaacagcataacccaaactcaacagcgc |
20789543 |
T |
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| Q |
543 |
atctctcaactcatttgaatcgattttgc |
571 |
Q |
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| T |
20789544 |
atctcgcaactcatttgaatcaattttgc |
20789572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 20788898 - 20788993
Alignment:
| Q |
102 |
tgtatttcgatagctcaccttcacagtaagacaacacctgcaatagtaaaca----aagagaatcagtttatcaatcgattttacacccaaacaga |
193 |
Q |
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| T |
20788898 |
tgtatttcaatagctcaccttcacagtaagacaacacctgcaacagcaaacaaaggaagagaatcaatttagcaatccattttacaccaaaacaga |
20788993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 342 - 567
Target Start/End: Original strand, 45334483 - 45334695
Alignment:
| Q |
342 |
tgaaaaagaagacacctagaccaaatcctttttaattatataaacaattttgcatccaataaaagaaagagttgtagcaaagccatactcaatgaaattg |
441 |
Q |
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| T |
45334483 |
tgaaaaagaagacaccaacacaaaatcgtttttaattatataaacaattttgcatccaataaaagaaag-------------ccatactcaatgaaattg |
45334569 |
T |
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| Q |
442 |
tcatattcgacagccttgttttttccaccacttttgtcgaacttggagacgagcaagtccaacaccattgaagaaacagcataacccaaacttaacagcg |
541 |
Q |
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| T |
45334570 |
tcatattcaatagccttgcttttgccaccagtcttgtcaaacttggagacgagcaagtccaataccataggagaaacagcataacccaaacttaacagcg |
45334669 |
T |
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| Q |
542 |
catctctcaactcatttgaatcgatt |
567 |
Q |
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| T |
45334670 |
catctcgcaactcaattgaattgatt |
45334695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 45334126 - 45334186
Alignment:
| Q |
86 |
agaaattatagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
146 |
Q |
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| T |
45334126 |
agaaataacagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
45334186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 45333804 - 45333836
Alignment:
| Q |
7 |
ttcatatactaggaaaataaaaccaggttgatt |
39 |
Q |
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| T |
45333804 |
ttcatatactaggaaaacaaaaccaggttgatt |
45333836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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