View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_21 (Length: 261)
Name: NF14751_low_21
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_21 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 32425592 - 32425822
Alignment:
| Q |
31 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgcttacgctactccaaattaaggcggatacgttcctccaaatcaagct |
130 |
Q |
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| T |
32425592 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgcttacgctactccaaattaaggcggatacgttcctccaaatcaagct |
32425691 |
T |
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| Q |
131 |
ggacacgcctctgcaaatccaggcggataagcttctccaaatgcaggatgggcaaataatcagtagactctcgtcctgattggaacacatgctgcatgaa |
230 |
Q |
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| T |
32425692 |
ggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcaggatgggcaaataatcagtagactctcgtcctgattggaacacatgctgcatgaa |
32425791 |
T |
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| Q |
231 |
attatgatccagacaaattcttttggccaat |
261 |
Q |
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| T |
32425792 |
attatgatccagacaaattcttttggccaat |
32425822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 32421305 - 32421347
Alignment:
| Q |
31 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
73 |
Q |
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| T |
32421305 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
32421347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 32421822 - 32421859
Alignment:
| Q |
165 |
ctccaaatgcaggatgggcaaataatcagtagactctc |
202 |
Q |
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| T |
32421822 |
ctccaaatgctggatggtcaaataatcagtagactctc |
32421859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 32421602 - 32421658
Alignment:
| Q |
116 |
cctccaaatcaagctggacacgcctctgcaaatccaggcggataagcttctccaaat |
172 |
Q |
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| T |
32421602 |
cctccaaatcaagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 32421603 - 32421687
Alignment:
| Q |
93 |
ctccaaattaaggcggatacgttcctccaaatcaagctggacacgcctctgcaaatccaggcggataagcttctccaaatgcagg |
177 |
Q |
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| T |
32421603 |
ctccaaatcaagctggatacgcccctccaaatcaaggcggatacgcccctccaaatcaaggtggatatgctcctccaaatgcagg |
32421687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 1543630 - 1543672
Alignment:
| Q |
31 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
73 |
Q |
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| T |
1543630 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
1543672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 1544026 - 1544071
Alignment:
| Q |
164 |
tctccaaatgcaggatgggcaaataatcagtagactctcgtcctga |
209 |
Q |
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| T |
1544026 |
tctccaaatgctggttggtcaaataatcagtagactctcgtcctga |
1544071 |
T |
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