View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_23 (Length: 255)
Name: NF14751_low_23
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_23 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 109405 - 109152
Alignment:
| Q |
1 |
caaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattccca |
100 |
Q |
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| T |
109405 |
caaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattccca |
109306 |
T |
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| Q |
101 |
aactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatattagaa |
200 |
Q |
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| T |
109305 |
aactcgttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatattagaa |
109206 |
T |
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| Q |
201 |
aaatgtaaatacagaaatggacagaatgatgaatcatttttatcgtaaccattaa |
255 |
Q |
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| T |
109205 |
aaatgtaaatacagaaatggacagaatgatgaatca-ttttatagtaaccattaa |
109152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 90608 - 90400
Alignment:
| Q |
1 |
caaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattccca |
100 |
Q |
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| T |
90608 |
caaggagataccacaaattaaaggttggcgaacttcttttctttcaaactttcaacagtctccttgatgctcacttccaaaggagtatattcaagtccca |
90509 |
T |
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| Q |
101 |
aactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatattagaa |
200 |
Q |
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| T |
90508 |
agcttttcgccttttctttggaaacctgatatataggcacatatggcttatcgtccgcacacctggtaacatagttgacaaagtgaaaacgatattagaa |
90409 |
T |
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| Q |
201 |
aaatgtaaa |
209 |
Q |
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|||| |||| |
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| T |
90408 |
aaatctaaa |
90400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 2709120 - 2708966
Alignment:
| Q |
6 |
agatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttcct--------tgatgctcacttccaaaggagtatattcaattc |
97 |
Q |
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| T |
2709120 |
agatatcacaaattaaaagttggcgaacttcttttctttcaaattttccacagtctcctactctccttgatgctgacttccaaaagagttaattcaattc |
2709021 |
T |
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| Q |
98 |
ccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatc |
152 |
Q |
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| T |
2709020 |
ccaagctcttgaccttttctttggaaacctgatatgtaggcatgtacggcttatc |
2708966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 90366 - 90330
Alignment:
| Q |
201 |
aaatgtaaatacagaaatggacagaatgatgaatcat |
237 |
Q |
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| T |
90366 |
aaatgtaaatacagaaacggacagaatgatgaatcat |
90330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 25936549 - 25936423
Alignment:
| Q |
13 |
acaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgcct |
112 |
Q |
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| T |
25936549 |
acaaattaaaagttgacgatctttttctctctgaagctttccacagtctccttgagggtgacttccaaagaagtaaactcgattcccaaactcttagcct |
25936450 |
T |
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| Q |
113 |
tttctttggaaaactgatatgtaggca |
139 |
Q |
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|||| || |||| ||||||||| |||| |
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| T |
25936449 |
tttccttagaaatctgatatgttggca |
25936423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 26105151 - 26105073
Alignment:
| Q |
61 |
tccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggca |
139 |
Q |
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| T |
26105151 |
tccttgaggctgatttccaaaggagtaaactcgattccaaagctcttggccttttccttggaaatctgatatgttggca |
26105073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 6089 - 5922
Alignment:
| Q |
8 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
107 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
6089 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
5990 |
T |
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| Q |
108 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
175 |
Q |
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| T |
5989 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
5922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 29550416 - 29550249
Alignment:
| Q |
8 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
107 |
Q |
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| T |
29550416 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
29550317 |
T |
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| Q |
108 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
175 |
Q |
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| T |
29550316 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
29550249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 29556792 - 29556747
Alignment:
| Q |
89 |
attcaattcccaaactctttgccttttctttggaaaactgatatgt |
134 |
Q |
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| T |
29556792 |
attcaattcccaacgtctttgccttttctttggaaatctgaaatgt |
29556747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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