View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14751_low_24 (Length: 254)
Name: NF14751_low_24
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_24 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 105593 - 105825
Alignment:
| Q |
18 |
agaagtaagtatcatattaatatgtactcattcatgggtgaaatccattcatcagttgataaactaattacctttattatttattttcagctactcaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105593 |
agaagtaagtatcatattaatatgtactcattcatgggtgaaatccattcatcagttgataaactaattacctttattatttattttcagctactcaatc |
105692 |
T |
|
| Q |
118 |
ccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagttttgttcaagaagctatatccagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105693 |
ccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagttttgttcaagaagctatatccagg |
105792 |
T |
|
| Q |
218 |
gcataggaagaaagagatagagaatttcatctc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
105793 |
gcataggaagaaagagatagagaatttcatctc |
105825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 166188 - 166362
Alignment:
| Q |
76 |
ataaactaattacctttattatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatc |
175 |
Q |
| |
|
||||||| |||| |||| |||||||||||||| ||||||||||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
166188 |
ataaactgattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatc |
166287 |
T |
|
| Q |
176 |
agcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctc |
250 |
Q |
| |
|
|| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
166288 |
ggcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcatctc |
166362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 13054128 - 13054299
Alignment:
| Q |
76 |
ataaactaattacctttattatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatc |
175 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| ||||||||||| ||||| || |||||||| |||| |||| |||||||||||||||||| | |
|
|
| T |
13054128 |
ataaactaattacctttgttatttatttgcaggtactgaatcccactgaatttttcgcagacattgtaattgaatatgagtatgttgagtgcactggacc |
13054227 |
T |
|
| Q |
176 |
agcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcat |
247 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
13054228 |
ggcaattcaagctttagttatgttcaataagctatatccagagcataggaagaacgagatagagaatttcat |
13054299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 12136237 - 12136081
Alignment:
| Q |
82 |
taattacctttattatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaat |
181 |
Q |
| |
|
|||||| |||||||||| ||||| || |||||||||| | |||||| |||| || || || || ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
12136237 |
taattaactttattattgatttttagttactcaatcctgcagagtttattgctgatatcgtggtcgagcatgaatatgttgattgcactggatcggcaat |
12136138 |
T |
|
| Q |
182 |
tcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagataga |
238 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
12136137 |
tcaagctttagttttgttcaagaaattatatccagagcataggaagaaagagataga |
12136081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 238
Target Start/End: Complemental strand, 91119 - 90958
Alignment:
| Q |
78 |
aaactaattacctttattatttattttc-agctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatca |
176 |
Q |
| |
|
|||||||||| |||| || ||||||||| ||||||| |||||||| || |||| | |||||| || |||| |||||||||||||||||||||||| || |
|
|
| T |
91119 |
aaactaattagctttcttgtttattttccagctactaaatcccacagaacttttcgaggacatggtaattgaacatgaatatgttgagtgcactggaaca |
91020 |
T |
|
| Q |
177 |
gcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagataga |
238 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
91019 |
acgattgaagctttagttttgttcaagaagctatatccagggcataggaagaacgagataga |
90958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 5653113 - 5653030
Alignment:
| Q |
133 |
cggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagttttgttcaagaagctatatccag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5653113 |
cggacattgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccag |
5653030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 5687769 - 5687616
Alignment:
| Q |
94 |
ttatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagt |
193 |
Q |
| |
|
||||| ||||||||||||||||||| | ||| ||| ||| ||| ||||| ||||||| |||||||||||| |||||| |||| | ||||||||| | || |
|
|
| T |
5687769 |
ttattaattttcagctactcaatccaattgaatttcttgaggaaattgtagttgagcgtgaatatgttgaatgcacttcatcatcgattcaagctatggt |
5687670 |
T |
|
| Q |
194 |
tttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcat |
247 |
Q |
| |
|
|||||| || || ||||||| | |||||| ||| |||| ||||||||||||| |
|
|
| T |
5687669 |
tttgtttaaaaaattatatcccgagcatagaaaggaagaagtagagaatttcat |
5687616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 5666699 - 5666546
Alignment:
| Q |
94 |
ttatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagt |
193 |
Q |
| |
|
||||| ||||||||||||||||||| | || ||| | | ||| ||||| ||||||| |||||||||||| |||||| |||| ||||||||||| | || |
|
|
| T |
5666699 |
ttattaattttcagctactcaatccaatagaatttctcgaggaaattgtagttgagcgtgaatatgttgaatgcacttcatcatcaattcaagctatggt |
5666600 |
T |
|
| Q |
194 |
tttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcat |
247 |
Q |
| |
|
|||||| || || ||||||| | |||||| ||| |||| ||||||||||||| |
|
|
| T |
5666599 |
tttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcat |
5666546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 5719879 - 5719732
Alignment:
| Q |
100 |
attttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagttttgtt |
199 |
Q |
| |
|
||||||||||||||||||| | || ||| ||| ||| | ||| ||||||| |||||||||||| |||||| |||| ||||||||||| | |||||||| |
|
|
| T |
5719879 |
attttcagctactcaatccaatagaatttcttgaggaaaatgtagttgagcgtgaatatgttgaatgcacttcatcatcaattcaagctatggttttgtt |
5719780 |
T |
|
| Q |
200 |
caagaagctatatccagggcataggaagaaagagatagagaatttcat |
247 |
Q |
| |
|
|| || ||||||| | |||||| ||| |||| ||||||||||||| |
|
|
| T |
5719779 |
taaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcat |
5719732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University