View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_27 (Length: 251)
Name: NF14751_low_27
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_27 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 40315800 - 40316024
Alignment:
| Q |
9 |
aaaatatgatatgtaaaaatctctaaatnnnnnnnnctcaaaatagcttgctttgatataaaatacggttcaaacatattaagccggtttcgaactggat |
108 |
Q |
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| T |
40315800 |
aaaatatgatatgtaaaaatctctaaataaaaaaa-ctcaaaatagcttgctttaatataaaatacggttcaaacatattaagccggtttcgaaccggat |
40315898 |
T |
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| Q |
109 |
ttaaactgaactaaatgatccaatgcagtttatgcaccataaacaccctacaattgcagggataattaaatctctgcgatccatgacgacttgaccatgg |
208 |
Q |
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| T |
40315899 |
ttaaactgaactgaatggttcaatacagtttatacaccatgaacaccctacaattgcagggataattaaatctctgtgatccatgacgacttgaccatgg |
40315998 |
T |
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| Q |
209 |
tcctcatttctctccgttctcctgat |
234 |
Q |
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| T |
40315999 |
tcctcatttctctccgttctcctgat |
40316024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 39606177 - 39606236
Alignment:
| Q |
55 |
cttgctttgatataaaatacggttcaaacatattaagccggtttcgaactggatttaaac |
114 |
Q |
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| T |
39606177 |
cttgctttaatataaaatacggttcaaacatattaaaccggttttgaattggttttaaac |
39606236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 50314 - 50253
Alignment:
| Q |
55 |
cttgctttgatataaaatacggttcaa---acatattaagccggtttcgaactggatttaaa |
113 |
Q |
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| T |
50314 |
cttgctttaatataaaatacggttcaaaatatatattaaaccggtttcgaactggttttaaa |
50253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 8803503 - 8803570
Alignment:
| Q |
53 |
agcttgctttgatataaaatacggttcaaacatattaagccggtttcgaactgg-atttaaactgaact |
120 |
Q |
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| T |
8803503 |
agcttgctttaata-aaaatacagttcacaaatattaaaccggtttcgaactggtttttaaactgaact |
8803570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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