View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14751_low_31 (Length: 213)

Name: NF14751_low_31
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14751_low_31
NF14751_low_31
[»] chr5 (10 HSPs)
chr5 (1-213)||(22928518-22928730)
chr5 (1-196)||(23022012-23022207)
chr5 (2-196)||(21264173-21264367)
chr5 (8-202)||(22983359-22983553)
chr5 (8-202)||(21249944-21250138)
chr5 (5-202)||(22933149-22933346)
chr5 (5-213)||(21211813-21212021)
chr5 (5-202)||(21350855-21351052)
chr5 (61-213)||(21320252-21320404)
chr5 (52-192)||(22963124-22963264)
[»] scaffold0009 (3 HSPs)
scaffold0009 (5-202)||(23216-23413)
scaffold0009 (73-201)||(258397-258525)
scaffold0009 (126-193)||(215275-215342)
[»] chr8 (1 HSPs)
chr8 (5-213)||(26914209-26914417)
[»] scaffold0056 (1 HSPs)
scaffold0056 (5-201)||(62353-62549)
[»] scaffold0328 (1 HSPs)
scaffold0328 (8-196)||(8786-8974)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 22928730 - 22928518
Alignment:
Q  1 caaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22928730 caaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcgatgtcattggct 22928631  T
Q  101 tgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  22928630 tgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggaggatagtaattcatcctcatttgtt 22928531  T
Q  201 gacctccgtcttc 213  Q
    |||||||||||||    
T  22928530 gacctccgtcttc 22928518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 23022012 - 23022207
Alignment:
Q  1 caaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggct 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23022012 caaaatgtctccaacatttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggct 23022111  T
Q  101 tgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23022112 tgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggaggatagtaattcatcctcatt 23022207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 21264367 - 21264173
Alignment:
Q  2 aaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggctt 101  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||| | |||||| ||||    
T  21264367 aaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttggagaccttcgacgtcatttgctt 21264268  T
Q  102 gtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatt 196  Q
    | ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||| |  |||||||||||    
T  21264267 ggagaaggatggtcaaggcagccgcatcagaatgaggattcagtccaatgacattttctggttggggacagggagggtagcatgtcatcctcatt 21264173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 22983359 - 22983553
Alignment:
Q  8 tctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgtagaa 107  Q
    ||||||| ||| |||||||||||||  | ||| |||| |||||||||||| ||||||||||||| ||||||||| |||||||  ||||||||||||||||    
T  22983359 tctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacatcattggcttgtagaa 22983458  T
Q  108 ggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttga 202  Q
    |||||||||||||||||  ||||||||||||| | | |||||| ||||  |||||||| ||||| || ||||||||||| ||||||||| |||||    
T  22983459 ggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaatttatcctcattccttga 22983553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 21250138 - 21249944
Alignment:
Q  8 tctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgtagaa 107  Q
    ||||||| ||| |||||||||||||  | ||| |||| ||||| |||||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||    
T  21250138 tctccaatgttgatgacaaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttggaggccttctatttcattggcttgtagaa 21250039  T
Q  108 ggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttga 202  Q
    |||||||||| |||||  |||||||||||||||| |||||||| |||||||||||||| ||||| || |||||  |||||  ||||||| |||||    
T  21250038 ggatggttaaagcaccaacatcagaatgaggattcagtccaataacattttctggttgaggacatggaggatacaaattccacctcattgcttga 21249944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 22933346 - 22933149
Alignment:
Q  5 atgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgta 104  Q
    |||||||||| ||| | ||| |||||||  | ||| |||| ||||| |||||| ||||||||||||| |||||| || |||||||| ||||| ||||| |    
T  22933346 atgtctccaaggttgacgacgaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttgaaggccttcaatatcattagcttgaa 22933247  T
Q  105 gaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttga 202  Q
    ||||||||||||    ||||  ||||||||||||||| |||||||||||||| |||||||||||||| || || |||||||||||||||||| |||||    
T  22933246 gaaggatggttagcatacccatatcagaatgaggatttagtccaatgacattctctggttggggacatggagggtagtaattcatcctcattccttga 22933149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 21212021 - 21211813
Alignment:
Q  5 atgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgta 104  Q
    |||||||||| ||| || ||||||||||  ||||| || |||| || |||||||  ||||||||||  |||||| || ||||| || ||||||  ||| |    
T  21212021 atgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttctatttcattgagttgaa 21211922  T
Q  105 gaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttgacc 204  Q
    |||| ||||| | ||||    |||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||  ||| ||    
T  21211921 gaagaatggtaagggcagtaccatcagaatgaggattaagtccaatgactttgtctggttggggacaaggaggatagtaattcatcctcattgattggcc 21211822  T
Q  205 tccgtcttc 213  Q
    ||| |||||    
T  21211821 tccctcttc 21211813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 21351052 - 21350855
Alignment:
Q  5 atgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgta 104  Q
    |||||||||| ||| | |||||||||||| | ||| || || | || |||||||  ||| |||||||  ||||| || ||||| |  |||||| |||| |    
T  21351052 atgtctccaatgttgacgacaaaagcatcagagaggggcttgataggaatccacattccgtcttttctgatttgaaggccttccacttcattgacttgga 21350953  T
Q  105 gaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttga 202  Q
    ||||||| || | |||||| | |||||||||||| ||||||||||||||||  ||||| |||||||| || ||||||||||||||||||||| |||||    
T  21350952 gaaggatagtaagggcaccagaatcagaatgaggtttgagtccaatgacatgctctggctggggacatgggggatagtaattcatcctcattccttga 21350855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 21320404 - 21320252
Alignment:
Q  61 tccatcttttcgtatttggagaccttcaatgtcattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttct 160  Q
    ||||||||||  |||||| || ||||  || |||||| |||| ||||||||||| | |||||  ||||| ||||||||||| ||||||||||| |  |||    
T  21320404 tccatctttttttatttgaaggccttgcatttcattgacttggagaaggatggtaagggcactagcatctgaatgaggattaagtccaatgacttgatct 21320305  T
Q  161 ggttggggacaaggcggatagtaattcatcctcatttcttgacctccgtcttc 213  Q
    ||||| ||||| || || || ||||||||||| |||  |||| |||| |||||    
T  21320304 ggttgaggacagggagggtaataattcatccttattgattgatctccttcttc 21320252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 22963124 - 22963264
Alignment:
Q  52 aatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatg 151  Q
    |||||||  ||||||||||  |||||| || |||| ||| |||||  |||  ||||||||||| | |||| |  ||||||| |||||||| ||||||||     
T  22963124 aatccacattccatctttttttatttgaagtccttgaatttcatttacttcaagaaggatggtaagggcaacaccatcagagtgaggattaagtccaata 22963223  T
Q  152 acattttctggttggggacaaggcggatagtaattcatcct 192  Q
    || | ||||||||| ||||| || |||||||||||||||||    
T  22963224 acttgttctggttgaggacatggaggatagtaattcatcct 22963264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 23216 - 23413
Alignment:
Q  5 atgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgta 104  Q
    |||||||||| ||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| |    
T  23216 atgtctccaatgtttacgacaaaagcaccggcgagtggtttaacagaaatccattgtccatcttttcttatttggaggccttcaatgtcattggcttgga 23315  T
Q  105 gaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttga 202  Q
    ||||||| ||||||  | ||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  23316 gaaggatagttaagcaatccgcatcagaatgcggattcaatccaatgacattttctggttggggacaaggaggatagtaattcatcctcgttgcttga 23413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 258397 - 258525
Alignment:
Q  73 tatttggagaccttcaatgtcattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaa 172  Q
    |||||| || ||||| || |||||| |||| ||||||||||| | || ||| ||||||||||||||||| ||||||||||| |  |||||||| ||||||    
T  258397 tatttgaagtccttccatttcattgacttggagaaggatggtaagggtaccagcatcagaatgaggattcagtccaatgacttgatctggttgaggacaa 258496  T
Q  173 ggcggatagtaattcatcctcatttcttg 201  Q
    || || || |||||||| |||||| ||||    
T  258497 ggagggtaataattcattctcattgcttg 258525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 215275 - 215342
Alignment:
Q  126 catcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctc 193  Q
    |||||||||||||||||||||||||||| |  |||||||| ||||| || ||||||||||||||||||    
T  215275 catcagaatgaggattgagtccaatgacttgatctggttgaggacatggaggatagtaattcatcctc 215342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 26914209 - 26914417
Alignment:
Q  5 atgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgta 104  Q
    |||||||||| ||| || ||||||||||  ||||| || |||| || |||||||  ||||||||||  |||||| || ||||| || ||||||  ||| |    
T  26914209 atgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttctatttcattgagttgga 26914308  T
Q  105 gaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttgacc 204  Q
    |||| ||||| | ||||    |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  26914309 gaagaatggtaagggcagtaccatcagaatgaggattgagtccaatgactttgtctggttggggacaaggaggatagtaattcatcctcattgcttgacc 26914408  T
Q  205 tccgtcttc 213  Q
    ||| |||||    
T  26914409 tccctcttc 26914417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 62353 - 62549
Alignment:
Q  5 atgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgta 104  Q
    |||||||||| ||| || ||||||||||  | |||||| |||| || |||||||  ||||||||||| || ||| || |||||||| ||||||  ||| |    
T  62353 atgtctccaatgttgatcacaaaagcatttgagagtggcttaataggaatccacattccatcttttcttacttgaaggccttcaatttcattgagttgga 62452  T
Q  105 gaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatttcttg 201  Q
    |||| ||||| |  |||||  |||||||||||||||||||||||||||| | ||||||||| ||||| || ||||||||||||||||||||| ||||    
T  62453 gaagaatggtaagagcaccaacatcagaatgaggattgagtccaatgacttgttctggttgaggacatggaggatagtaattcatcctcattgcttg 62549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 8974 - 8786
Alignment:
Q  8 tctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgtcattggcttgtagaa 107  Q
    ||||||||||| | |||||||||||| | ||  || || | || |||||||  ||||||||||  |||||| || |||| |||||||||| |||  ||||    
T  8974 tctccaacgttgacgacaaaagcatcagagataggattgataggaatccacattccatctttttttatttgaagtccttgaatgtcattgacttcgagaa 8875  T
Q  108 ggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggcggatagtaattcatcctcatt 196  Q
    | || || | | ||   ||||||||||||||||  ||||||||||| |  |||||||| ||||| || || || |||||||||||||||    
T  8874 gtattgtaaggacagtagcatcagaatgaggatcaagtccaatgacttgctctggttgaggacatggagggtaataattcatcctcatt 8786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University