View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_4 (Length: 526)
Name: NF14751_low_4
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 36785598 - 36785227
Alignment:
| Q |
1 |
tcgatctcaatcaccgcgttcgacttaataaatttaatatttttactagttgaatagaacttgtgaattaattagaattagaatcaagttatgatcttaa |
100 |
Q |
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| T |
36785598 |
tcgatctcaatcaccgcgttcgacttaataaatttaatatttttactagttgaatagaatttgtgaattaattagaattagaatcaagttatgatcttaa |
36785499 |
T |
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| Q |
101 |
atttgtgggatcaattgaagcctagtaattggtttgtattttattatttattattgtgtcttaatagtatagcaatgaccggtgacaattaaggcatatt |
200 |
Q |
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| T |
36785498 |
atttgtgggatcaattgaagcctagtaattagtttgtattttattatttattattgtgtcttaatagtatagcaatgaccggtgacaattaaggcatatt |
36785399 |
T |
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| Q |
201 |
ttannnnnnngggtgaagaacgattctttcagtctacttaccagagcaacatgattactttgagcaaaatattcaatacgactttaaaaaagatagaaaa |
300 |
Q |
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| T |
36785398 |
ttatttttatgggtgaagaacgattctttcagtctacttaccagagcaacatgattattttgagcaaaatattcaatatgactttaaaaaagatagaaaa |
36785299 |
T |
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| Q |
301 |
attgataagacttaagaggtaagagcatggacatgcaacgtggatgaaatatttggcaatttgttgctagag |
372 |
Q |
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| T |
36785298 |
attgataagagttaagaggtaagagcatggacatgcaacgtggatgaaatatttggcaatttgttgctagag |
36785227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 458 - 509
Target Start/End: Complemental strand, 36785142 - 36785091
Alignment:
| Q |
458 |
tttctttcagaaatgtatatattaactcctcaaaccaaagtctcatgttaag |
509 |
Q |
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| T |
36785142 |
tttctttcagaaatgtatatattaactcctcaaaccaaagtctcatgttaag |
36785091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 36792398 - 36792351
Alignment:
| Q |
320 |
taagagcatggacatgcaacgtggatgaaatatttggcaatttgttgc |
367 |
Q |
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| T |
36792398 |
taagagcatagacatgcaacgtgggtgaaatatttgacaatttattgc |
36792351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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