View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_5 (Length: 522)
Name: NF14751_low_5
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Original strand, 9231713 - 9232196
Alignment:
| Q |
15 |
caaaggcagctagatatggtggcaacctaatgataaatgattgacccatttataaaatttaaaaacataaaccaatcacaacattttctcatgagggctt |
114 |
Q |
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| T |
9231713 |
caaagacagctagatatggtggcaacctaatgataaatgattgacccatttataaaattaaaaaacataaaccaatcacaacattttctcatgagggctt |
9231812 |
T |
|
| Q |
115 |
gttttaaaaaatttcatannnnnnngaagacttgaatgatgaaaagacaagctcgattttcttgttcatcatttgtacaactacaaacattggtaaaaat |
214 |
Q |
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| T |
9231813 |
gttttaaaaaatttcatatttttttgaagacttgaatgatgaaaagacaagctcaattttcttgttcatcatttgtacaactacaaacattggtaaaaat |
9231912 |
T |
|
| Q |
215 |
atttgcttcaatttttatcctattccatcaaaattgtctagctaagaatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacatat |
314 |
Q |
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| T |
9231913 |
atttgcttcaatttttatcctattccatcaaaattgtctagctaagcatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacatat |
9232012 |
T |
|
| Q |
315 |
ccttttcgtctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggcccatcattaactctgatctcggggcaat |
414 |
Q |
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|| ||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||||||| || |||| ||| ||| |
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| T |
9232013 |
ccatttcgtctcaaaaccgatccaaatcactgcggagacacaaggtacgaattagattgcaacaaaaacggtccatcattaaccatgttctccgggaaat |
9232112 |
T |
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| Q |
415 |
actatgtacaacacattaattacaagagatttaaaatttcgctaagtgactccggtgcagtggaagacactaattgctctttta |
498 |
Q |
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| T |
9232113 |
actatgtacaacacattgattacaagggatttaaaattcgattaagtgacgcgggtgcagtggaagatgctaattgctctttta |
9232196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 214 - 496
Target Start/End: Complemental strand, 9386733 - 9386451
Alignment:
| Q |
214 |
tatttgcttcaatttttatcctattccatcaaaattgtctagctaagaatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacata |
313 |
Q |
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|||||||||||||| || || | | |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
9386733 |
tatttgcttcaattcttctcatttctcatcaaaattgtcttgctaagcatcaccaaccatgcccaacgtcatcatgcggcaaaatcaccaacataacata |
9386634 |
T |
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| Q |
314 |
tccttttcgtctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggcccatcattaactctgatctcggggcaa |
413 |
Q |
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| T |
9386633 |
cccatttcgtctcaaaactgatccaaaccactgtggggacaaaaggtatgaattagattgcaacgaaaatggtccatcattaaccatgttctccgggaaa |
9386534 |
T |
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| Q |
414 |
tactatgtacaacacattaattacaagagatttaaaatttcgctaagtgactccggtgcagtggaagacactaattgctcttt |
496 |
Q |
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||||||||||||||||| |||||||||| |||| |||| |||||||| | |||||||||||||| ||||||||||||| |
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| T |
9386533 |
tactatgtacaacacatagattacaagaggtttataattcgattaagtgacgcgggtgcagtggaagatgctaattgctcttt |
9386451 |
T |
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