View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14751_low_7 (Length: 473)

Name: NF14751_low_7
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14751_low_7
NF14751_low_7
[»] chr6 (3 HSPs)
chr6 (304-454)||(22857051-22857201)
chr6 (18-135)||(22856821-22856938)
chr6 (208-247)||(22857011-22857050)
[»] chr7 (3 HSPs)
chr7 (41-135)||(43015180-43015275)
chr7 (294-353)||(10255964-10256023)
chr7 (208-274)||(43015347-43015413)
[»] chr2 (4 HSPs)
chr2 (41-135)||(38959225-38959320)
chr2 (38-135)||(8873017-8873116)
chr2 (208-288)||(8873185-8873265)
chr2 (208-258)||(38959117-38959167)
[»] chr3 (2 HSPs)
chr3 (38-135)||(39902201-39902300)
chr3 (208-288)||(39902053-39902133)
[»] chr5 (1 HSPs)
chr5 (294-353)||(27391547-27391606)
[»] chr8 (1 HSPs)
chr8 (358-439)||(26778380-26778467)
[»] chr4 (1 HSPs)
chr4 (377-439)||(53600885-53600948)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 304 - 454
Target Start/End: Original strand, 22857051 - 22857201
Alignment:
Q  304 tcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaacagcaataatggtgatttgtattttgtgttgttgtgagaaaaaagggggt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  22857051 tcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaacagtaataatagtgatttgtattttgtgttgttgtgagaaaaaagggggt 22857150  T
Q  404 gcactagtaaaaatgcaaacaatattaaaaaactaaactctgaggattttt 454  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  22857151 gcactagtaaaaatgcaaacaatattaaaaaactaagctcagaggattttt 22857201  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 22856821 - 22856938
Alignment:
Q  18 attttgtgcaccgggagatcatgccaggaaaccaattatatgaaaatagctcttcaagtgtagaatggatttaaaaattcagttaaatgtttaaagaaat 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22856821 attttgtgcaccgtgagatcatgccaggaaaccaattatatgaaaatagttctttaagtgtagaatggatttaaaaattcagttaaatgtttaaagaaat 22856920  T
Q  118 ttccagaatcagaataag 135  Q
    ||||||||||||||||||    
T  22856921 ttccagaatcagaataag 22856938  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 22857011 - 22857050
Alignment:
Q  208 cacaatgatgtttaattttcttcaattgatgaagttggaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22857011 cacaatgatgtttaattttcttcaattgatgaagttggaa 22857050  T

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Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 43015180 - 43015275
Alignment:
Q  41 ccaggaaaccaattatatgaaaatagctcttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 135  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || |||||||||| |||||||||||||||| ||||||    
T  43015180 ccaggaaaccaattatatgaaaatagttcttcaagagtagaatgtatttaaaaattcaattgaaatgtttaatgaaatttccagaatcaaaataag 43015275  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 10255964 - 10256023
Alignment:
Q  294 ctttaatggttcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaa 353  Q
    ||||||||||||||| |||||  ||| |||||||| ||||||||||||||||| ||||||    
T  10255964 ctttaatggttcagaagcaagacattgaaaatactttcagaagcaaagacataagatgaa 10256023  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 43015347 - 43015413
Alignment:
Q  208 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaacgcagtttgttgtttt 274  Q
    ||||||| ||||||||||||||| ||| || | |||||||||||||||||| |  ||||||||||||    
T  43015347 cacaatggtgtttaattttcttcgattaataacgttggaagatgatgaaaaagtggtttgttgtttt 43015413  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 38959320 - 38959225
Alignment:
Q  41 ccaggaaaccaattatatgaaaatagctcttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 135  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || |||||||||| |||||||||||||||| ||||||    
T  38959320 ccaggaaaccaattatatgaaaatagttcttcaagagtagaatgtatttaaaaattcaattgaaatgtttaatgaaatttccagaatcaaaataag 38959225  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 8873017 - 8873116
Alignment:
Q  38 atgccaggaaaccaattatatgaaaatagct-cttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 135  Q
    |||||||||||||| |||||||||||||| | ||||||| |||||||| ||||||||||||| || |||||||||||||||| |||| |||| |||||||    
T  8873017 atgccaggaaaccatttatatgaaaatagttccttcaagagtagaatgaatttaaaaattcaattgaaatgtttaaagaaatgtccataatcggaataag 8873116  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 8873185 - 8873265
Alignment:
Q  208 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaacgcagtttgttgttttgacacaaagttgga 288  Q
    ||||||||| |||||||||||||||||||| | |||| ||||| ||||||| || ||||| ||||||| || |||| ||||    
T  8873185 cacaatgatctttaattttcttcaattgataatgttgtaagataatgaaaaagcggtttggtgttttggcaaaaagctgga 8873265  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 38959167 - 38959117
Alignment:
Q  208 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaa 258  Q
    ||||||||||||||||||||||| ||| || |  |||||||||||||||||    
T  38959167 cacaatgatgtttaattttcttcgattaataacattggaagatgatgaaaa 38959117  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 39902300 - 39902201
Alignment:
Q  38 atgccaggaaaccaattatatgaaaatagctc-ttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 135  Q
    |||||||||||||| |||||||||||||| || |||||| |||||||| ||||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  39902300 atgccaggaaaccatttatatgaaaatagttccttcaagagtagaatgaatttaaaaattcaattgaaatgtttaaagaaatgtccagaatcggaataag 39902201  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 39902133 - 39902053
Alignment:
Q  208 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaacgcagtttgttgttttgacacaaagttgga 288  Q
    ||||||||| |||||||||||||||||||| | |||||||||| ||||||| || ||||| ||||||| || |||| ||||    
T  39902133 cacaatgatctttaattttcttcaattgataatgttggaagataatgaaaaagcggtttggtgttttggcaaaaagctgga 39902053  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 27391547 - 27391606
Alignment:
Q  294 ctttaatggttcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaa 353  Q
    ||||||||||||||| |||||  ||| |||||||| ||||||||||||||||| ||||||    
T  27391547 ctttaatggttcagaagcaagacattgaaaatactttcagaagcaaagacataagatgaa 27391606  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 439
Target Start/End: Original strand, 26778380 - 26778467
Alignment:
Q  358 aataatggtgatttgtattttgtgttgt-----tgtgagaaaaaaggg-ggtgcactagtaaaaatgcaaacaatattaaaaaactaa 439  Q
    |||||||||||| | |||||||||||||     |||||| |||| | | ||||||||||||||| | |||||||||||||||||||||    
T  26778380 aataatggtgatgtatattttgtgttgtgctcttgtgaggaaaaggtgaggtgcactagtaaaattacaaacaatattaaaaaactaa 26778467  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 53600885 - 53600948
Alignment:
Q  377 ttgtgttgttgtgagaaaaaaggg-ggtgcactagtaaaaatgcaaacaatattaaaaaactaa 439  Q
    ||||| ||||||||| |||| | | ||||||||||||||| | |||||||||||||||||||||    
T  53600885 ttgtgctgttgtgaggaaaaggtgaggtgcactagtaaaattacaaacaatattaaaaaactaa 53600948  T

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