View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_8 (Length: 450)
Name: NF14751_low_8
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 38 - 434
Target Start/End: Original strand, 3706062 - 3706458
Alignment:
| Q |
38 |
aaacaaagctacattcctttgtagcaaattcaatctggactcgccattaatctggcgagccccagcagtgacgatgcagaggtcagaccccatcgtcact |
137 |
Q |
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| T |
3706062 |
aaacaaagctacattcctttgtagcaaattcaatctggactcgccattaatctgacgagccccagcagtgacgatgcagaggtcggaacccatcgtcact |
3706161 |
T |
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| Q |
138 |
gaatagtcagtggaggcctggatcttagtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaa |
237 |
Q |
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| T |
3706162 |
gaatagtcagtggaggcctggatcttagtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaa |
3706261 |
T |
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| Q |
238 |
caagaacaagctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgttt |
337 |
Q |
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| T |
3706262 |
caagaacaagctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgttt |
3706361 |
T |
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| Q |
338 |
ggttggagaaggaggtgaggcatgttggatggacttgaagaaggattgagttaggtccaaaccacctggtcccaatgatgaacctgatatgcttttg |
434 |
Q |
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| T |
3706362 |
ggttggagaaggaggtgaggcatgttggatggacttgaagaaggattgagttaggtccaaaccatctggtcccaatgatgaacctgatatgcttttg |
3706458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 331
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
168 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
267 |
Q |
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| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
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| Q |
268 |
ttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
331 |
Q |
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| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
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