View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14751_low_9 (Length: 448)
Name: NF14751_low_9
Description: NF14751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14751_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 1005859 - 1006174
Alignment:
| Q |
20 |
accacatgtatacacataaatataattttctttccactaattgcttcggttcctaattcttttctgacataaagtgttctaactttataaggtataatga |
119 |
Q |
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| T |
1005859 |
accacatgcatacacataaatataattttctttccaccaattgcttcggttcctaattcttttctagcataaagtgttataactttataaggtataatga |
1005958 |
T |
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| Q |
120 |
tactataaaaacatgtatttacccattaaagcgatttattttattcactaaaaaagccattcatttatccgtgagtccgtgttgtttgtgttaatttact |
219 |
Q |
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| T |
1005959 |
tactataacaatatgtatttacccattaaagcgatttattttattcactaaaaaagccattcatttatctgtgagtccgtattgtttgtgttaatttact |
1006058 |
T |
|
| Q |
220 |
tttaaagagaacatgccataaaaatattacannnnnnncgtgtgttaaccttccgtttttcaaaagaaatagatcttgataatcgggagttcggttgtga |
319 |
Q |
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| T |
1006059 |
tttaaagagaacatgccataaaaatattaca-ttttttcgtgtgttaaccttctgtttttcaaaagaaatggaacttgataatcgggagttcggttgtga |
1006157 |
T |
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| Q |
320 |
cgtaaggatagtttgat |
336 |
Q |
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| T |
1006158 |
cgtaaggatagtttgat |
1006174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 31290512 - 31290633
Alignment:
| Q |
20 |
accacatgtatacacataaatataattttctttccactaattgcttcggttcctaattcttttctgacataaagtgttctaactttataaggtataatga |
119 |
Q |
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| T |
31290512 |
accacatgtatacacataaatataattttcttctcactaattgcttcagttcctagttcttttctggcataaagtattataactttataaggtataatga |
31290611 |
T |
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| Q |
120 |
tactataaaaacatgtatttac |
141 |
Q |
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| T |
31290612 |
tactataacaacatgtatttac |
31290633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 129 - 336
Target Start/End: Original strand, 31291041 - 31291239
Alignment:
| Q |
129 |
aacatgtatttacccattaaagcgatttattttattcactaaaaaa-gccattcatttatccgtgagtccgtgttgtttgtgttaatttacttttaaaga |
227 |
Q |
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||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||| |
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| T |
31291041 |
aacatgtatttacccattaaagccattgatttcattcactaaaaaaagccattcatttctccg--------tgttgtttgtgttaatttacttttagaga |
31291132 |
T |
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| Q |
228 |
gaacatgccataaaaatattacannnnnnncgtgtgttaaccttccgtttttcaaaagaaatagatcttgataatcgggagttcggttgtgacgtaagga |
327 |
Q |
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| T |
31291133 |
gaacatggcataaaaatattacattttttt-ttgtgttaacctt-catttttcaatagaaataggccttgataattgggagttcggttgtgaagtaagga |
31291230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 1006222 - 1006272
Alignment:
| Q |
384 |
tcatctttgatgaaactcattttaactcttgatcgcaattgcttgatttat |
434 |
Q |
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| T |
1006222 |
tcatctttgatgaaacttattttagctcttgatcgcaattgcttgatttat |
1006272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 31291287 - 31291331
Alignment:
| Q |
384 |
tcatctttgatgaaactcattttaactcttgatcgcaattgcttg |
428 |
Q |
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| T |
31291287 |
tcatctttgatgaaaatcattttagcccttgatcgcaattgcttg |
31291331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 8836766 - 8836691
Alignment:
| Q |
87 |
cataaagtgttctaactttataaggtataatgatac--tataaaaacatgtatttacccattaaagcgatttattt |
160 |
Q |
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| T |
8836766 |
cataaagtattataactttataaagtataataaaacaatataaaaacatatatttatccattaaagccattaattt |
8836691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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