View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14752_high_1 (Length: 710)

Name: NF14752_high_1
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14752_high_1
NF14752_high_1
[»] chr2 (1 HSPs)
chr2 (11-694)||(10760108-10760791)


Alignment Details
Target: chr2 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 11 - 694
Target Start/End: Original strand, 10760108 - 10760791
Alignment:
Q  11 gtgagatgaagcaacccaaagaacattactattacatttttcttctcgttttgggtttctctcatgaaagatcatagaaaacatagcagagccatttcat 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760108 gtgacatgaagcaacccaaagaacattactattacatttttcttctcgttttgggtttctctcatgaaagatcatagaaaacatagcagagccatttcat 10760207  T
Q  111 ggagcacattcttctggttcactattgtggttgtcttatcttccattatctttacctccctaattatttcatccatccaccccttctacctccctcgatt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760208 ggagcacattcttttggttcactattgtggttgtcttatcttccattatctttacctccctaattatttcatccatccaccccttctacctccctcgatt 10760307  T
Q  211 tcacatcccaattgcagctttgaaatggccaactccagtgccaccccaaatcacaattcgggaaacagttatgcttcctgatcatgttttaatgttctta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  10760308 tcacatcccaattgcagctttgaaatggccaactccagtgccaccccaaatcacaattcgggaaacagttttgcttcctgatcatgttttaattttctta 10760407  T
Q  311 aactaccctttatcttttcgctatcacaccaaacatgaccttcaatgtgtttactcttcagatgatgactcaaaacctcgcctcactcaagaaccggttc 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  10760408 aactaccctttatcttttcgctatcacaccaaacgtgaccttcaatgtgtttactcttcagatcatgactcaaaacctcgtctcactcaagaaccggttc 10760507  T
Q  411 aactttactcgattaggcttctcgaacaaattgtacgttgtccaatccctccacgtggcgataatatatcacttatgataaaatccaacggtcccattaa 510  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |    
T  10760508 aactttactcgattaggcttcacgaacaaattgtacgttgtccaatccctccacgtggtgagaatatatcacttatgataaaatccaacggtcccattca 10760607  T
Q  511 aataaaaaagtcgtcaatccataattgggaaccactagtctacgaagctctcttcgatcacgacaacaccaccatcgtatttgtgaaaggccttaatcta 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10760608 aataaaaaagtcgtcaatccataattgggaaccactagtctacgaagctctcttcgatcgcgacaacaccaccatcgtatttgtgaaaggccttaatcta 10760707  T
Q  611 agaccagagaaattaggtgaaccctctagattccaatgtgtatatggttgggatttcacgaagcccaatttcttatttaaatct 694  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10760708 cgaccagagaaattaggtgaaccctctagattccaatgtgtatatggttgggatttcacgaagccgaatttcttatttaaatct 10760791  T

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