View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_high_16 (Length: 272)
Name: NF14752_high_16
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 6426335 - 6426093
Alignment:
| Q |
15 |
atcacgagttttaggagtaaacaatggaa-gaaaaacttacatggcttggtggaatatgtttaccactcaagagatcaagcaacaaagttccaaaactgt |
113 |
Q |
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| T |
6426335 |
atcacgagttttaggagtaaacaatggaaagaaaaacttacatggcttggtggaatatgtttaccactcaagagatcaagcaacaaagttccaaaactgt |
6426236 |
T |
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| Q |
114 |
aaaccacactctccgccgtcactctacctgcacataaacccaaatgtacaaaagatcaacagtcacataccaatacatgcaatgaaaacacatgtagtca |
213 |
Q |
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| T |
6426235 |
aaaccacactctccgccgtcactctacctgcacataaacccatatgtacaaaagatcaacagtcacataccaatacaggcaatgaaaacacatgtagtca |
6426136 |
T |
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| Q |
214 |
gtcaatcagagctattggatgaaaatcttacgactcacatacc |
256 |
Q |
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| T |
6426135 |
gtcaatcagagctatcggatgaaaatcttacgactcacatacc |
6426093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 24339579 - 24339515
Alignment:
| Q |
52 |
tacatggcttggtggaatatgtttaccactcaagagatcaagcaacaaagttccaaaactgtaaa |
116 |
Q |
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|||||| || ||||||||||| || ||||| || ||||||||||| || |||||||| ||||||| |
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| T |
24339579 |
tacatgactcggtggaatatgctttccacttaaaagatcaagcaataaggttccaaagctgtaaa |
24339515 |
T |
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