View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_high_21 (Length: 236)
Name: NF14752_high_21
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_high_21 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 11488094 - 11487878
Alignment:
| Q |
21 |
tccaacgaggaagggaggcaattttcaggcaatgactcgagcttgtcacaaaaataaat-tgcaaatgatatcagcgaggatgggaggaagttttctggc |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| | || ||||||||||||||||||||||||||||||||| |
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| T |
11488094 |
tccaacgaggaagggaggcagttttcaggcaatgactcgagcttgttacaaaaaaaaaaatttaagtgatatcagcgaggatgggaggaagttttctggt |
11487995 |
T |
|
| Q |
120 |
aatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagcccacttctaacatagggcttcattttgtagcgaccat |
219 |
Q |
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||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |
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| T |
11487994 |
aatgactcaaagtgttcactacaccaaaatgaaagatctttgagagaggagaggtatcgaagcccacttccatcatagggcttcattttgtagcgacaat |
11487895 |
T |
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| Q |
220 |
cgatagtcagagacaca |
236 |
Q |
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| T |
11487894 |
cgatagtcagagacaca |
11487878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 11772233 - 11772134
Alignment:
| Q |
86 |
tgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagccca |
185 |
Q |
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| T |
11772233 |
tgatttcaacgaggaagggaggcagttttctggcaatgactcgagctgttgacaattccaaaaatagagatattggagagaggagaggtgtcgaagccca |
11772134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 11779052 - 11779151
Alignment:
| Q |
86 |
tgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagccca |
185 |
Q |
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| T |
11779052 |
tgatttcaacgaggaagggaggcagttttctggcaatgactcgagctgttgacaattccaaaaatagagatattcgagagaggagaggtgtcgaagccca |
11779151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 9841857 - 9841736
Alignment:
| Q |
86 |
tgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagccca |
185 |
Q |
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|||| |||||||||| |||||| |||||||||||||||| ||||| ||| || | || |||| |||| || |||||||||||||| |||||||||| |
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| T |
9841857 |
tgatttcagcgaggaagggaggcagttttctggcaatgactcaagctgtggacaaaacgaaaaatcgagatattggagagaggagaggtgtcgaagccca |
9841758 |
T |
|
| Q |
186 |
cttctaacatagggcttcattt |
207 |
Q |
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||| | || ||| |||||||| |
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| T |
9841757 |
tttccatcaaaggacttcattt |
9841736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 10035002 - 10034881
Alignment:
| Q |
86 |
tgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagccca |
185 |
Q |
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|||| |||||||||| |||||| ||||||||||||||| ||||| || | || || |||||| | ||| || |||||||||||||| |||||||||| |
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| T |
10035002 |
tgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaattccaaaaacagagagtttggagagaggagaggtgtcgaagccca |
10034903 |
T |
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| Q |
186 |
cttctaacatagggcttcattt |
207 |
Q |
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||| | || ||| |||||||| |
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| T |
10034902 |
tttccatcaaaggacttcattt |
10034881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 10129921 - 10129800
Alignment:
| Q |
86 |
tgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagccca |
185 |
Q |
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|||| |||||||||| |||||| ||||||||||||||| ||||| || | || || |||||| | |||| || ||||||| |||||| |||||||||| |
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| T |
10129921 |
tgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaattccaaaagaagagatgttggagagagaagaggtgtcgaagccca |
10129822 |
T |
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| Q |
186 |
cttctaacatagggcttcattt |
207 |
Q |
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||| | || ||| |||||||| |
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| T |
10129821 |
tttccatcaaaggacttcattt |
10129800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 10431111 - 10431232
Alignment:
| Q |
86 |
tgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatgaaagatctttgagagaggagaggtatcgaagccca |
185 |
Q |
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| T |
10431111 |
tgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgatcacaaaaccaaaaacagagagtttggagagaggagaggtgtcgcagccca |
10431210 |
T |
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| Q |
186 |
cttctaacatagggcttcattt |
207 |
Q |
| |
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||| | || ||| |||||||| |
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| T |
10431211 |
tttccatcaaaggacttcattt |
10431232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 9980500 - 9980344
Alignment:
| Q |
51 |
aatgactcgagcttgtcacaaaaataaattgcaaatgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatg |
150 |
Q |
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|||||||| ||||| | |||| ||||| | ||| |||| |||||||||| |||||| ||||||||||||||| ||||| |||| || | || |||| |
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| T |
9980500 |
aatgactctagctttttacaatcataaaattcaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttgacaaaacaaaaaac |
9980401 |
T |
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| Q |
151 |
aaagatctttgagagaggagaggtatcgaagcccacttctaacatagggcttcattt |
207 |
Q |
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| ||| || |||||||||||||| ||| |||||| ||| | || ||| |||||||| |
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| T |
9980400 |
agagactttggagagaggagaggtgtcgcagcccatttccatcaaaggacttcattt |
9980344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 11772227 - 11772187
Alignment:
| Q |
23 |
caacgaggaagggaggcaattttcaggcaatgactcgagct |
63 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||| |
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| T |
11772227 |
caacgaggaagggaggcagttttctggcaatgactcgagct |
11772187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 11779058 - 11779098
Alignment:
| Q |
23 |
caacgaggaagggaggcaattttcaggcaatgactcgagct |
63 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||| |
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| T |
11779058 |
caacgaggaagggaggcagttttctggcaatgactcgagct |
11779098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 10520479 - 10520422
Alignment:
| Q |
91 |
tcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaa |
148 |
Q |
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|||||||||| |||||| ||||||||||||||| ||||| ||||||| || |||||| |
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| T |
10520479 |
tcagcgaggaagggaggcagttttctggcaatgtctcaagttgttcacaatcccaaaa |
10520422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 10531771 - 10531734
Alignment:
| Q |
26 |
cgaggaagggaggcaattttcaggcaatgactcgagct |
63 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||| |
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| T |
10531771 |
cgaggaagggaggcaattttctggcaatgactcaagct |
10531734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 54637 - 54793
Alignment:
| Q |
51 |
aatgactcgagcttgtcacaaaaataaattgcaaatgatatcagcgaggatgggaggaagttttctggcaatgattcaaggtgttcactataccaaaatg |
150 |
Q |
| |
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|||||||| ||||| | |||| ||||| | ||| |||| |||||||||| |||||| ||||||||||||||| ||||| |||| || | || |||| |
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| T |
54637 |
aatgactctagctttttacaatcataaaattcaagtgatttcagcgaggaagggaggcagttttctggcaatgtctcaagttgttgacaaaacaaaaaac |
54736 |
T |
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| Q |
151 |
aaagatctttgagagaggagaggtatcgaagcccacttctaacatagggcttcattt |
207 |
Q |
| |
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| ||| || |||||||||||||| ||| |||||| ||| | || ||| |||||||| |
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| T |
54737 |
agagactttggagagaggagaggtgtcgcagcccatttccatcaaaggacttcattt |
54793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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