View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_high_3 (Length: 547)
Name: NF14752_high_3
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 28608091 - 28608610
Alignment:
| Q |
10 |
aagaatatctaaataggcggaatccaaatcctagcattagttgctaaatatttgtgaatagatttattttggatgataaatatgtgactgtagtattaaa |
109 |
Q |
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| T |
28608091 |
aagaatatctaaataggcggaatccaaatcctagcattagttgctaaatatttgtgaattgatttattttggatgataaatatgtgatagtagtattaa- |
28608189 |
T |
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| Q |
110 |
tttggatcaaaataatattagaagcttgtgaattaatttatctaacttgatgattgacatattatgtaaactataaaagttgtttccttactcgctgtgt |
209 |
Q |
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| T |
28608190 |
tttggatcaaaataatattagaagcttgtgaattaatttatctaacttgatgattgacatattatgtaaactataaaagttgtttccttactcgctgtgt |
28608289 |
T |
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| Q |
210 |
tctaaatgaagtgtagtttagagtttttcacatagattaagaaatacaataaataagcatcgtttaaagtttttgaaatgggggagtattaaacttcaat |
309 |
Q |
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| T |
28608290 |
tctaaatgaagtgtagtttagagtttttcaaatagattaagaaatacaataaataagcatcgtttaaagtttttgaaatgggggagtattaaacttcaat |
28608389 |
T |
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| Q |
310 |
tttttctttaaaaaacataattgttggatccaagggatttaaacatagataagtcgcacttacttgtttaatgcctgaatggaatggtccactagaagca |
409 |
Q |
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| T |
28608390 |
tttttctttaaaaaacataattgttggatccaagggatttgaacatagataagtcgcacttacttgtttaatgcctgaatggaatggtccactggaagca |
28608489 |
T |
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| Q |
410 |
gctgcgtatggtacgagatacgagggcaatatcaaactggattgaggctggtattgttgaaaataggcggggatggataaaccaaggaacaatgaaacac |
509 |
Q |
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| T |
28608490 |
gctgcgtatggtacgagatacgagggcaatatcaaactggattgaggctggtattgttgaaaataggcggggatggataaaccaaggaacaatgaaacac |
28608589 |
T |
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| Q |
510 |
caactattgttatgttcctaa |
530 |
Q |
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| T |
28608590 |
caactattgttatgttcctaa |
28608610 |
T |
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