View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_high_4 (Length: 508)
Name: NF14752_high_4
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Complemental strand, 3543965 - 3543481
Alignment:
| Q |
7 |
ccaccaccatcactacaaccggcgtaggtctcggctacggcatcacaatcgccgtaagcatccttgtcctcatctccaccatcatgctcgtttcctacct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543965 |
ccaccaccatcactacaaccggcgtaggtctcggctacggcatcacaatcgccgtaagcatccttgtcctcatctccaccatcatgctcgtttcctacct |
3543866 |
T |
|
| Q |
107 |
ctgcgtccgtataaaatcacaaggacgcagagactccttccatctcgacatccaccatcaacctcatactactatcaactcgggctcggctcagcccggt |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3543865 |
ttgcgtccgtataaaatcacacggacgcagagactccttccatctcgacatccaccatcaacctcatactactatcaactcgggcttggctcagcccggt |
3543766 |
T |
|
| Q |
207 |
ccatttatcatgggcctagaaaagcccatgattgaatcatatccaaagatgatacttggagagagtagaagattgcccaaacccaatgatggccagtgtg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3543765 |
ccatttatcatgggcctagaaaagcccatgattgaatcatatccaaagatgatacttggagagagtagaagattgcccaaacccaatggtggccagtgtg |
3543666 |
T |
|
| Q |
307 |
ctatttgtttgactgattatctaccaaaggaaacaatacgctgtgttccagattgtcaacattgttttcatgcagattgtgttgatgagtggctaaaaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543665 |
ctatttgtttgactgattatctaccaaaggaaacaatacgctgtgttccagattgtcaacattgttttcatgcagattgtgttgatgagtggctaaaaat |
3543566 |
T |
|
| Q |
407 |
gagtgccacgtgtcctttgtgtcggaattctccggctccgtcgccgataactacgcctgtggccacgccgttgtcggagcttgct |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543565 |
gagtgccacgtgtcctttgtgtcggaattctccggctccgtcgccgataactacgcctgtggccacgccgttgtcggagcttgct |
3543481 |
T |
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