View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_12 (Length: 322)
Name: NF14752_low_12
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 41990695 - 41990393
Alignment:
| Q |
4 |
tatgaatccaaaagcaagaattaagaacaacatgtgagatagaacaaacaggaatgagtttcttaatggtgaacaaaacttgaacataaaaacctaaaaa |
103 |
Q |
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| T |
41990695 |
tatgagtccaaaagcaagaattaagaacaacatgtgagatagaacaaacaggaatgagtttcttaatggtgaacaaaacttgaacataaaaacctaaaaa |
41990596 |
T |
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| Q |
104 |
gagacgannnnnnnccacggatttcatttttcacacaataagactttcaaacccctcccgattctaggtagaatctcgattttcacaacattgcttagac |
203 |
Q |
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| T |
41990595 |
gagacgatttttttccaccggtttcatttttcacacaataagactttgaaacccctcccgattctaggtagaatctcgattttcacaacattgcttagac |
41990496 |
T |
|
| Q |
204 |
ctacataattgtcacttgggccagcatattttgcacttagcccctttgttggcacttaggcatatataactgtcagaactctttgtgcttgagtatttaa |
303 |
Q |
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| T |
41990495 |
ctacataattgtcacttgggcctgcatattttgcacttagcccctttgttggcacttaggcatatataactgtcagaactctttgtgcttgagtatttaa |
41990396 |
T |
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| Q |
304 |
taa |
306 |
Q |
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||| |
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| T |
41990395 |
taa |
41990393 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 28931660 - 28931705
Alignment:
| Q |
155 |
cccctcccgattctaggtagaatctcgattttcacaacattgctta |
200 |
Q |
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| T |
28931660 |
cccctcccgatcctaggttgaatctcaattttcacaacatcgctta |
28931705 |
T |
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