View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14752_low_19 (Length: 268)

Name: NF14752_low_19
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14752_low_19
NF14752_low_19
[»] chr2 (2 HSPs)
chr2 (1-256)||(32636360-32636615)
chr2 (37-256)||(32618266-32618484)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 32636360 - 32636615
Alignment:
Q  1 ataaatcctcaaataatttgaaggtttctatagttattaaacatttagtccatgaataaatacttatgtaaagatttgggtgaatgcagatctatggagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32636360 ataaatcctcaaataatttgaaggtttctatagttattaaacatttagtctatgaataaatacttatgtaaagatttgggtcaatgcagatctatggagc 32636459  T
Q  101 agtgtttatgaacaacattcttggttttgtagtgatatctatccttatatatatgagagatatcacttgggaattttcagctgatgtattggtggtggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32636460 agtgtttatgaacaacattcttggttttgtagtgatatctatccttatatatatgagagatatcacttgggaattttcagctgatgtattggtggtggca 32636559  T
Q  201 attgtttgtattgtgatgggtctcactactagttttcgttccacttttcctctgtg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32636560 attgtttgtattgtgatgggtctcactactagttttcgttccacttttcctctgtg 32636615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 37 - 256
Target Start/End: Original strand, 32618266 - 32618484
Alignment:
Q  37 ttaaacatttagtccatgaataaatacttatgtaaagatttgggtgaatgcagatctatggagcagtgtttatgaacaacattcttggttttgtagtgat 136  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||    
T  32618266 ttaaacatttagtctatgaataaatacttatg-aaagatttgggtcaatgcagatttatggtgcagtgttcatgaacaacattcttggatttgtggtgat 32618364  T
Q  137 atctatccttatatatatgagagatatcacttgggaattttcagctgatgtattggtggtggcaattgtttgtattgtgatgggtctcactactagtttt 236  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||    
T  32618365 atctattcttatatatatgagggatatcacttgggaattttcagctgatgtattagtggtggcaattgtttgtgttgtgatgggtctcaccactagtttt 32618464  T
Q  237 cgttccacttttcctctgtg 256  Q
    ||||||||||||||||||||    
T  32618465 cgttccacttttcctctgtg 32618484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University