View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_2 (Length: 619)
Name: NF14752_low_2
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 10 - 604
Target Start/End: Complemental strand, 43668022 - 43667428
Alignment:
| Q |
10 |
tgaaatgaagaaccgcgatagctattggaccagtaatctaatattcattatttattctataaatggtcattgtagataaaaattagttaatttattgttg |
109 |
Q |
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| T |
43668022 |
tgaaatgaagaaccgcgatagctattggaccagtaatctaatattcattatttattctataaatggtcattgtagataaaaattagttaatttattgttg |
43667923 |
T |
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| Q |
110 |
gtggataaaagttaaccactgccactacccatttggctctacattcaaaagtgatgaattaattaattaaggcaacatatatattataaaaaattgacaa |
209 |
Q |
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| T |
43667922 |
gtggataaaaggtaaccactgccactacccatttggctctacattcaaaagtgatgaattaattaattaaggcaacatatatattataaaaaattgacaa |
43667823 |
T |
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| Q |
210 |
agaaattctttacttaactaattattaaaagatcgaatatactggtagaattatgtgattgtatgtatatatatttgtcttctgatgatgcaatatgcaa |
309 |
Q |
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| T |
43667822 |
agaaattctttacttaactaattattaaaagatcgaatatactggtagaattatgtgattgtatgtatatatatttgtcttctgatgatgcaatatgcag |
43667723 |
T |
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| Q |
310 |
cgtcacaatgatgaaagcatcatctatctgaaaattttggagggagcctctctaagaaatggtgcatagttacattacaaatgaagcacttgatgagtaa |
409 |
Q |
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| T |
43667722 |
cgtcacaatgatgaaagcatcatctatctgaaaattttggagggagcatctctaagaaatggtgcatagttacattacaaatgaagcacttgatgagtaa |
43667623 |
T |
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| Q |
410 |
taatataatctcaaaagtggtccaaaatgggtccatatttttacattagggtcagccacgccacatccatccacatgaatgtctgcccataaaccctttc |
509 |
Q |
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| T |
43667622 |
taatataatctcaaaagtggtccaaaatgggtccatatttttacattagggtcagccacgccacatccatccacatgaatgtctgcccataaaccctttc |
43667523 |
T |
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| Q |
510 |
tgacaacattttctttctttattcaattgtatactcaatatattttgtgtcatttccagttacaaatgactaacaaacaaatataaatccatagt |
604 |
Q |
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| T |
43667522 |
tgacaacattttctttctttattcaattatatactcaatatattttgtgtcatttccggttacaaatgactaacaaacaaatataaatccatagt |
43667428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 18244113 - 18243989
Alignment:
| Q |
230 |
attattaaaagatcgaatatactg-gtagaattatgtgattgtatgt----atatatatttgtcttctgatgatgcaatatgcaacgtcaca----atga |
320 |
Q |
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| T |
18244113 |
attattaaaagaccgaatatactaagtaaaattatgtgattttatatgtctatatatatttgttttctgatgatgcagtatgcagcgtcacatcagatga |
18244014 |
T |
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| Q |
321 |
tgaaagcatcatctatctgaaaatt |
345 |
Q |
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| T |
18244013 |
tgaaagcaccatctatttgaaaatt |
18243989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 18238181 - 18238097
Alignment:
| Q |
87 |
aaaaattagttaatttattg-ttggtggataaaagttaaccactgccactacccatttggctct--acattcaaaagtgatgaat |
168 |
Q |
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| T |
18238181 |
aaaaattagttaatttatttcttggtggataaaaggtaaccatatctactccccatttggctctacacattcaaaagtcatgaat |
18238097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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