View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_20 (Length: 259)
Name: NF14752_low_20
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 33681509 - 33681392
Alignment:
| Q |
133 |
gtgatctccattaacatttccaatgataaagtaatccaggaaacaaattttactattgaagtaattgcaaaaacaaaatatagaaaatagaatatc---- |
228 |
Q |
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| T |
33681509 |
gtgatctccattaacatttccaatgataaagtaatccaggaaacaaattttactattgaagtaattgcaaaaacaaaatatagaaaatagaatatcttaa |
33681410 |
T |
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| Q |
229 |
tttacccggtgcaccaaa |
246 |
Q |
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| T |
33681409 |
tttacccggtgcaccaaa |
33681392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 33681660 - 33681571
Alignment:
| Q |
47 |
aaactgcaataattctaaatataagatgaattgaaaagtatttcctcaacacaacatatatcattttctaaatggaaaagtttatagtga |
136 |
Q |
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| T |
33681660 |
aaactgcaataattctaaatataagatgaattgaaaagtatttcctcaacacaacatatatcattttctaaatggaaaagtttatagtga |
33681571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 33666878 - 33666789
Alignment:
| Q |
157 |
gataaagtaatccaggaaacaaattttactattgaagtaattgcaaaaacaaaatatagaaaatagaatatctttacccggtgcaccaaa |
246 |
Q |
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| T |
33666878 |
gatatagtaatccaggaaacaaaatttactaatgaagtgattgcaaaaacaaaatatagacacaagactatctttacccgatgcaccaaa |
33666789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 33667029 - 33666966
Alignment:
| Q |
67 |
ataagatgaattgaaaagtatttcctcaacacaacatatatcattttctaaatggaaaagttta |
130 |
Q |
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| T |
33667029 |
ataagatgaatagaaaagtatttcctgaacacagcatagatcattttctaaatggaaaagttta |
33666966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33681749 - 33681703
Alignment:
| Q |
1 |
tggaaacaattcaaaatacacaaacacgcaagtatgcaactatttaa |
47 |
Q |
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| T |
33681749 |
tggaaacaattcaaaatacacaaacacgcaagtatgcaactatttaa |
33681703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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