View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14752_low_22 (Length: 255)
Name: NF14752_low_22
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_22 |
 | |
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| [»] scaffold0017 (4 HSPs) |
| | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 44144619 - 44144848
Alignment:
| Q |
21 |
acacgcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgcacaattcatatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144619 |
acacgcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgcacaattcatatg |
44144718 |
T |
|
| Q |
121 |
atttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
44144719 |
atttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtggtcaaatcccaaaatttat |
44144818 |
T |
|
| Q |
221 |
tggctccttcagcaagttacgacacctttg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
44144819 |
tggctccttcagcaagttacgacacctttg |
44144848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 44611632 - 44611752
Alignment:
| Q |
128 |
tggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttattggctcc |
227 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| ||||| |||| |||||| |||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
44611632 |
tggtgaaatcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctcc |
44611731 |
T |
|
| Q |
228 |
ttcagcaagttacgacacctt |
248 |
Q |
| |
|
||| |||| ||| || ||||| |
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|
| T |
44611732 |
ttctgcaacttaagatacctt |
44611752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 44785964 - 44785837
Alignment:
| Q |
121 |
atttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttat |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||| | |||||||||| ||| |||||| |||| ||||||||| ||||||||||| |
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|
| T |
44785964 |
atttgagtggtgtaatcaatccttcaataactgagctgcgacatctaaaatatctagacctcagtcatttgattactaatgatcaaattccaaaatttat |
44785865 |
T |
|
| Q |
221 |
tggctccttcagcaagttacgacacctt |
248 |
Q |
| |
|
||| ||||||||||| |||||| ||||| |
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|
| T |
44785864 |
tggatccttcagcaacttacgatacctt |
44785837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 35898929 - 35899031
Alignment:
| Q |
133 |
aaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttattggctccttcag |
232 |
Q |
| |
|
||||||| |||| |||||||| |||||||||| ||| || ||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
35898929 |
aaatcaaccctttaataactgaattgcaacatcttacatatttagaccttggttttttgaatactagtggtcaaatcccaaaatttattggctccttcag |
35899028 |
T |
|
| Q |
233 |
caa |
235 |
Q |
| |
|
||| |
|
|
| T |
35899029 |
caa |
35899031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 11544868 - 11544823
Alignment:
| Q |
203 |
tcaaatcccaaaatttattggctccttcagcaagttacgacacctt |
248 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| || ||||| |
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|
| T |
11544868 |
tcaaatcccaaaatttattggctccttaaccaagttatgatacctt |
11544823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 29228801 - 29228682
Alignment:
| Q |
121 |
atttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttat |
220 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||| |||||||||||||| | |||||||||| ||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
29228801 |
atttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaatttat |
29228702 |
T |
|
| Q |
221 |
tggctccttcagcaagttac |
240 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29228701 |
tggctccttcagcaagttac |
29228682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 29342100 - 29341981
Alignment:
| Q |
121 |
atttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttat |
220 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||| |||||||||||||| | |||||||||| ||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
29342100 |
atttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaatttat |
29342001 |
T |
|
| Q |
221 |
tggctccttcagcaagttac |
240 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29342000 |
tggctccttcagcaagttac |
29341981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 8341792 - 8341928
Alignment:
| Q |
112 |
attcatatgatttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatccc |
211 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| | || ||||||||||| |||| ||||| ||||||||||||||| ||| |||||| || |
|
|
| T |
8341792 |
attcacattatttgagtggtgaaatcaatccttcaataactgagttgtaacatctaacatatcttgacctcagttatttgaatactagtggtcaaattcc |
8341891 |
T |
|
| Q |
212 |
aaaatttattggctccttcagcaagttacgacacctt |
248 |
Q |
| |
|
|||||||||||| || |||||||| |||||| ||||| |
|
|
| T |
8341892 |
aaaatttattggatcgttcagcaacttacgatacctt |
8341928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 26727406 - 26727524
Alignment:
| Q |
130 |
gtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttattggctcctt |
229 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| |||||||||| |||| |||| | | | | ||| |||||||| |||||||||||||| |
|
|
| T |
26727406 |
gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagaccttagttcattgatgattagaggtcatatcccaaattttattggctcctt |
26727505 |
T |
|
| Q |
230 |
cagcaagttacgacacctt |
248 |
Q |
| |
|
|| ||| |||||| ||||| |
|
|
| T |
26727506 |
catcaatttacgatacctt |
26727524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 26727246 - 26727330
Alignment:
| Q |
25 |
gcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgca |
109 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||||| | | || |||||||||||||||| |||| ||||||||||| |
|
|
| T |
26727246 |
gcactcctcacattcaaacaaggccttcaagatgagtatggcattttgtccacatggaaggatgatcaaaatgcagattgctgca |
26727330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 8341643 - 8341731
Alignment:
| Q |
21 |
acacgcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgca |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||| |||||| || | || |||||||||| | ||| | || ||||||||||| |
|
|
| T |
8341643 |
acacgcactcctcacgttcaaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgcagattgctgca |
8341731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 173733 - 173860
Alignment:
| Q |
121 |
atttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||| |||||||| || ||||||| ||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
173733 |
atttgagtggtgaaatcaatccttcaataactgagttacaaaatctaacatatttagacctcagttatttgaatactagtagtcaaatctcaaaatttat |
173832 |
T |
|
| Q |
221 |
tggctccttcagcaagttacgacacctt |
248 |
Q |
| |
|
|||||||||||||||||| || |||||| |
|
|
| T |
173833 |
tggctccttcagcaagttgcggcacctt |
173860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 168725 - 168843
Alignment:
| Q |
122 |
tttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttatt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| | |||| ||||| || ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
168725 |
tttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaatttatt |
168824 |
T |
|
| Q |
222 |
ggctccttcagcaagttac |
240 |
Q |
| |
|
|| ||| ||||||| |||| |
|
|
| T |
168825 |
ggatccatcagcaaattac |
168843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 168565 - 168648
Alignment:
| Q |
26 |
cactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgca |
109 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||| || | || ||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
168565 |
cactcgtcactttgaaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcagattgctgca |
168648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 173572 - 173657
Alignment:
| Q |
24 |
cgcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgca |
109 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||||| || | || |||||||||| | || |||||||||||||||| |
|
|
| T |
173572 |
cgcactcctcacgttcaaacaaggccttcaagatgattatggcatgttgtccacatggaagggcggtcaaaatgaagattgctgca |
173657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 30067 - 29949
Alignment:
| Q |
122 |
tttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtgatcaaatcccaaaatttatt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| | |||| ||||| || ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
30067 |
tttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaatttatt |
29968 |
T |
|
| Q |
222 |
ggctccttcagcaagttac |
240 |
Q |
| |
|
|| ||| ||||||| |||| |
|
|
| T |
29967 |
ggatccatcagcaaattac |
29949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 30227 - 30144
Alignment:
| Q |
26 |
cactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgca |
109 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||| || | || ||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
30227 |
cactcgtcactttgaaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcagattgctgca |
30144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 29508392 - 29508308
Alignment:
| Q |
25 |
gcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaagattgctgca |
109 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||| |||||| || | || ||||||||||| || || |||||||||||||||| |
|
|
| T |
29508392 |
gcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaagattgctgca |
29508308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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