View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_27 (Length: 224)
Name: NF14752_low_27
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 15236546 - 15236496
Alignment:
| Q |
18 |
gattattttgttcttccatgaagggcatgcacaaagtgagtactaaatata |
68 |
Q |
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| T |
15236546 |
gattattttgttcttccatgaagggcatgcacaaagtgagtactaattata |
15236496 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 15236479 - 15236450
Alignment:
| Q |
61 |
taaatataaaaggtacaaaatatttaaaga |
90 |
Q |
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| T |
15236479 |
taaatataaaaggtacaaaatatttaaaga |
15236450 |
T |
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