View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_6 (Length: 443)
Name: NF14752_low_6
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 35261524 - 35261293
Alignment:
| Q |
1 |
ttatcaataacataaaggnnnnnnntgaacaaagaagtgaagtgaagttgttcatacacagcatctacattaaaaatacacacatctctatcaactagaa |
100 |
Q |
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| T |
35261524 |
ttatcaataacataaaggaaaaaaatgaacaaagaagtgaagtgaagttgttcatacacagcatccacattaaaagtacacacatctctatcaactagaa |
35261425 |
T |
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| Q |
101 |
ggaaaataagcaaaaatgtgatttttatcaacaatttaagaaatttcgaaactcattcaaacccggagcagttttttcgaacaatggatttaagattcta |
200 |
Q |
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| T |
35261424 |
ggaaaataagcaaaaatgtgatttttatcaacaatttaagaaatttcaaaactcattcaaacccggagcagttttttcgaacaatggatttaagattcta |
35261325 |
T |
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| Q |
201 |
aattcatgaatccgccacggactcaacatgtt |
232 |
Q |
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| T |
35261324 |
aattcatgaatccgccacggactcaacatgtt |
35261293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 35261263 - 35261215
Alignment:
| Q |
260 |
acaaaattgtt-aaaacttatatactgatttagaagtgtttcatcatta |
307 |
Q |
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| T |
35261263 |
acaaaattgtttaaaacttatatactgatttagaagtatttcatcatta |
35261215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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