View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_8 (Length: 410)
Name: NF14752_low_8
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 396
Target Start/End: Complemental strand, 17775838 - 17775453
Alignment:
| Q |
6 |
aatatgcttgaggggaccgctttgcccttttaggaacattatgtctaaatttttaccttgaaaatgcaatttagctttcnnnnnnnactactatcaatgt |
105 |
Q |
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| T |
17775838 |
aatatgcttgaggggaccgctttgcccttttaggaacattatgtctaaatgtttaccttgaaaatgcaatttagctat-tttttttactactatcaatgt |
17775740 |
T |
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| Q |
106 |
gtcaaacatgagagttaggtaaaaacttattttcaatgtggtgttacattgtatttgccacttttttgtttgagttttcttcaccgagtagaacagtaat |
205 |
Q |
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| T |
17775739 |
gtcaaacatgagagttaggtaaaaacttattttcaatgaggtgttacattgtatttgccacttttttgtttgagttttcttcaccgagtagaacagtaat |
17775640 |
T |
|
| Q |
206 |
aaactcgtgaattttgacttatttgataaaaaataagaattaaatatatatttttctgtatgaagtgaagaagttttgattttagttc-tnnnnnnntat |
304 |
Q |
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| T |
17775639 |
aaactcgtgaattttgacttatttgataaaaaataagaattaaatatatatttttctgtatgaagtgaataagttttgattttagttcttaaaaaaatat |
17775540 |
T |
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| Q |
305 |
ttgtatgaatgcactttttaattcatcttatttttataaagatttgg----atgcccgatactatgagtggaaataggctttgcacggtctaagtt |
396 |
Q |
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| T |
17775539 |
ttgtatgaatgcac--tttaattcatc-------tataaagatttggctccatgcccggtattacgagtggaaataggttttgcaaggtctaagtt |
17775453 |
T |
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