View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14752_low_9 (Length: 398)
Name: NF14752_low_9
Description: NF14752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14752_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 1490346 - 1489984
Alignment:
| Q |
17 |
cataggcagggtgaaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaacatgacaaaaattagtcataagttcaagca |
116 |
Q |
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| T |
1490346 |
cataggcagggtgaaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaacatgacaaaaattagtcataagttcaagca |
1490247 |
T |
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| Q |
117 |
atcacaaacttgagatattatctgcatattcttaattaaatatatttgtttagttactgcatagacgtaataagagggtgtatcaatttggcataatgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490246 |
atcacaaacttgagatattatctgcatattcttaattaaatatatttgtttagttactgcatagacgtaataagagggtgtatcaatttggcataatgct |
1490147 |
T |
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| Q |
217 |
aaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgtatacctaatgctccttcaacacatccaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490146 |
aaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgtatacctaatgctccttcaacacatccaac |
1490047 |
T |
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| Q |
317 |
aaaattgggattcaaggaagcatattcgccgcctttgtagaacacacctacaatcttcttctt |
379 |
Q |
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| T |
1490046 |
aaaattgggattcaaggaagcatattcgccgcctttgtagaacacacctacaatcttcttctt |
1489984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 188 - 379
Target Start/End: Complemental strand, 1494952 - 1494761
Alignment:
| Q |
188 |
aagagggtgtatcaatttggcataatgctaaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgt |
287 |
Q |
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| T |
1494952 |
aagagggtggattaatttgtcaaaattctaaccagaatcaggtccttctttgtcatcagtgacaatgtattcatgtccttgtgattcaagccactcacgt |
1494853 |
T |
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| Q |
288 |
atacctaatgctccttcaacacatccaacaaaattgggattcaaggaagcatattcgccgcctttgtagaacacacctacaatcttcttctt |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||| |||||||| |
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| T |
1494852 |
atacctaatgctccttcaacacatccaacaaaattgggattggatgcagcattctcatttcctttgtagaacacacctacaattttcttctt |
1494761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 1495078 - 1495007
Alignment:
| Q |
17 |
cataggcagggtgaaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaaca |
88 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| |||| |
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| T |
1495078 |
cataggcagggtgaaatggtgtagatatcaggacatgcagatcgggaatgtgcttctcgagttctggtaaca |
1495007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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