View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14753_high_3 (Length: 363)

Name: NF14753_high_3
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14753_high_3
NF14753_high_3
[»] chr6 (2 HSPs)
chr6 (13-346)||(31453426-31453761)
chr6 (152-185)||(10749308-10749341)
[»] chr7 (1 HSPs)
chr7 (120-185)||(26024072-26024138)
[»] chr4 (1 HSPs)
chr4 (149-184)||(30770837-30770872)
[»] chr8 (1 HSPs)
chr8 (152-185)||(4558755-4558788)
[»] chr1 (1 HSPs)
chr1 (141-185)||(8795061-8795106)
[»] chr3 (1 HSPs)
chr3 (141-185)||(37788806-37788850)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 31453426 - 31453761
Alignment:
Q  13 caaaggaacaaaaagaaccaatatttaaaaactagactttacaaatagttcaacctgtaaatcttggttggataaacatcttagaataccttttatagca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31453426 caaaggaacaaaaagaaccaatatttaaaaactagactttacaaatagttcaacctgtaaatcttggttggataaacatcttagaataccttttatagca 31453525  T
Q  113 taccaatttatcatataaacacctctgaataagttattttataatacaagataaaataaagttaaattattttgtatatctagtttataagctattttcg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||    
T  31453526 taccaatttatcatataaacacctctgaataagttattttataatacaagataaaataaatttaaattattttgtatatttagtttataaactattttcg 31453625  T
Q  213 taagatatattatcgagcttataaaaatagcttacaaatatgcaataagttgttttcataa--aannnnnnnctttcaaaaagtataacaattgtttatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||           ||||||||||||||||||||||||||||    
T  31453626 taagatatattatcgagcttataaaaatagcttacaaatatgctataagttgttttcataagtgttttttttctttcaaaaagtataacaattgtttatg 31453725  T
Q  311 tgctactaaatactcaattcggttttatatagtagt 346  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31453726 tgctactaaatactcaattcggtcttatatagtagt 31453761  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 10749341 - 10749308
Alignment:
Q  152 tataatacaagataaaataaagttaaattatttt 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  10749341 tataataaaagataaaataaagttaaattatttt 10749308  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 26024138 - 26024072
Alignment:
Q  120 ttatcatataaacacctctgaataagttattt-tataatacaagataaaataaagttaaattatttt 185  Q
    ||||||||||||||| | |||||||||||||| ||| ||| ||||| ||||||||| ||||||||||    
T  26024138 ttatcatataaacacttatgaataagttatttctattatataagatgaaataaagtcaaattatttt 26024072  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 30770837 - 30770872
Alignment:
Q  149 ttttataatacaagataaaataaagttaaattattt 184  Q
    |||||||||| |||||||||||||||||||||||||    
T  30770837 ttttataataaaagataaaataaagttaaattattt 30770872  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 4558755 - 4558788
Alignment:
Q  152 tataatacaagataaaataaagttaaattatttt 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  4558755 tataataaaagataaaataaagttaaattatttt 4558788  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 8795061 - 8795106
Alignment:
Q  141 ataagttattt-tataatacaagataaaataaagttaaattatttt 185  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||    
T  8795061 ataagttatttatataataaaagataaaataaagttaaataatttt 8795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 37788806 - 37788850
Alignment:
Q  141 ataagttattttataatacaagataaaataaagttaaattatttt 185  Q
    |||||||||||||||| | |||||||||||||||  |||||||||    
T  37788806 ataagttattttataacaaaagataaaataaagtccaattatttt 37788850  T

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