View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14753_high_5 (Length: 307)
Name: NF14753_high_5
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14753_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 41270485 - 41270756
Alignment:
| Q |
21 |
atagggctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaagagatcatagactaacacctgaatgttcgggttaaat |
120 |
Q |
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| T |
41270485 |
atagggctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaagagatcatagactaacacctgaatgttcgggttaaat |
41270584 |
T |
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| Q |
121 |
aaagattaaaaacttgcaaatttggggggtgtcccaaaaaatactgttctcttgtgatctattttgtttgtttgtttgagaaagttttctttttacattg |
220 |
Q |
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| T |
41270585 |
aaagattaaaaacttgcaaatttggggggtgtcccaaaaaatactgttctcttgtgatctattttgtttgtttgtttgagaaagttttctttttacattg |
41270684 |
T |
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| Q |
221 |
tgggggtgacatgaaatggga-ccctatcacttgagtgtccaaggctctaaagacacgagaaagtttggaag |
291 |
Q |
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| T |
41270685 |
tgggggtgacatgaaatgggacccctatcacttgagtgtccaaggctctaaagacacgagaaaatttggaag |
41270756 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 27684021 - 27683928
Alignment:
| Q |
27 |
ctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaagagatcatagactaacacctgaatgttcgggttaaat |
120 |
Q |
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||||||||||||| |||||| |||| ||||||||||| ||||| |||| || ||||| || |||||||||||||||||||||| ||||||||| |
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| T |
27684021 |
ctatgagttgggttcaaagacaccacatggtttataactattgccaagatcctaaaagggaccatagactaacacctgaatgttggggttaaat |
27683928 |
T |
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