View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14753_high_7 (Length: 245)
Name: NF14753_high_7
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14753_high_7 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 5680007 - 5680238
Alignment:
| Q |
14 |
aatatgatatacttccnnnnnnntgtccaatatacagaaagacatgtccaatagcatgcctataaaattttgtcgtttaatcagataagagacatattct |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5680007 |
aatatgatatacttccaaaaaaatgtccaatatacagaaagacatgtccaatagcatgcctataaaattttgtcgtttaatcagataagagacatattct |
5680106 |
T |
|
| Q |
114 |
tgagatgagggtaaacattggttagagattcgtgtaattaacctttaaccctttataaatatcatcacattatatcaaattgcgttttgtctacacctat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5680107 |
tgagatgagggtaaacattggttagagattcgtgtaattaacctttaaccctttataaatatcatcacattacatcaaattgcgttttgtctacacctat |
5680206 |
T |
|
| Q |
214 |
ggcaatgaacatcatcatttccacaacatgtc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5680207 |
ggcaatgaacatcatcatttccacaacatgtc |
5680238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 5689460 - 5689496
Alignment:
| Q |
45 |
atacagaaagacatgtccaatagcatgcctataaaat |
81 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |
|
|
| T |
5689460 |
atacagaaagacctatccaatagcatgcctataaaat |
5689496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University