View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14753_high_9 (Length: 202)

Name: NF14753_high_9
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14753_high_9
NF14753_high_9
[»] chr3 (12 HSPs)
chr3 (18-186)||(5454015-5454183)
chr3 (18-186)||(5445432-5445600)
chr3 (18-165)||(20342759-20342906)
chr3 (18-168)||(5502057-5502207)
chr3 (18-168)||(5849776-5849926)
chr3 (18-186)||(5489208-5489376)
chr3 (18-168)||(5803349-5803499)
chr3 (18-165)||(5483760-5483907)
chr3 (18-157)||(5829038-5829177)
chr3 (18-185)||(5854926-5855093)
chr3 (18-168)||(5524925-5525075)
chr3 (81-151)||(3120899-3120969)
[»] chr6 (2 HSPs)
chr6 (18-186)||(25810212-25810380)
chr6 (42-108)||(3979410-3979476)
[»] chr8 (5 HSPs)
chr8 (39-109)||(23285660-23285730)
chr8 (39-109)||(23392835-23392905)
chr8 (92-157)||(19398702-19398767)
chr8 (92-157)||(19415058-19415123)
chr8 (37-74)||(4120878-4120915)
[»] chr2 (1 HSPs)
chr2 (37-100)||(34328536-34328599)
[»] chr7 (2 HSPs)
chr7 (32-73)||(20063004-20063045)
chr7 (32-73)||(20279110-20279151)
[»] chr4 (2 HSPs)
chr4 (37-106)||(31732684-31732753)
chr4 (37-106)||(31745585-31745654)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 5454015 - 5454183
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454015 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 5454114  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcatatt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454115 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcatatt 5454183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 5445432 - 5445600
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5445432 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 5445531  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcatatt 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  5445532 gtcctgatgttttagaaagcctcttaacagcaatctcttggccgtctaccattacgccctagtcatatt 5445600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 20342759 - 20342906
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20342759 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattcctt 20342858  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtcta 165  Q
    |||||||||||||||||||||||||||| || ||||||||||| ||||    
T  20342859 gtcccgatgttttagaaagcctcttaacggcgatctcttggccatcta 20342906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 5502057 - 5502207
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  5502057 ttttcatcttgttgaatagaacaaccaagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttcctt 5502156  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctacca 168  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5502157 gtgccgatgttttagaaagccttttaacagcaatctcttggccgtctacca 5502207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 5849926 - 5849776
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  5849926 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaactcctt 5849827  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctacca 168  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  5849826 gtcccgatgtattacaaagcctcttaacagcaatctcttggccatctacca 5849776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 5489208 - 5489376
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  5489208 ttttcttcttgtcgaatagaacaaccaagaagttttacaagattacggtgttgaagcgttgccatcaagtttacttcatttttgaactcctcggttcctt 5489307  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcatatt 186  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||    
T  5489308 gtgccgatgttttagaaagcctcttaacagcaatctcttggccgtcaaccattacgccctagtaatatt 5489376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 5803499 - 5803349
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  5803499 ttttcatcttgttgaatagaacagccaagaagttttactagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcggatcctt 5803400  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctacca 168  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  5803399 gtcccgatgttttagaaagcctcttaacagcaatctcttgcccatctacca 5803349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 5483760 - 5483907
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  5483760 ttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttgaactcctcggatcctt 5483859  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtcta 165  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5483860 gtctcgatgttttagaaagcctcttaacagcaatctcttggccatcta 5483907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 5829177 - 5829038
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5829177 ttttcatcttgttgaatagaacaaccaaaaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaattcctcagttcctt 5829078  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttg 157  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  5829077 gtcctgatgttttagatagcctcttaacagcaatctcttg 5829038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5855093 - 5854926
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  5855093 ttttcatcttggtgaatagaacaaccaagaagttttacaagatttctgtgctgaagtgttgccatcaacttcacttcatttttgaactcctcggttcctt 5854994  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcatat 185  Q
    |||| || |||||||| ||||||||||||||||||||| |||| |||| || |||| |||||| ||||    
T  5854993 gtcctgaggttttagagagcctcttaacagcaatctctcggccatctaacattacgccctagtaatat 5854926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 5524925 - 5525075
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    |||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  5524925 ttttcatcttgtcgaatagaacagccgagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttgaactcctcggatcctt 5525024  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctacca 168  Q
    ||  |||||||||||  |||||||||||||||||||||||||| |||||||    
T  5525025 gtatcgatgttttagctagcctcttaacagcaatctcttggccatctacca 5525075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 3120969 - 3120899
Alignment:
Q  81 atcaactttacttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaat 151  Q
    |||||| |||||||||| ||||| ||||||   |||||  |||||||||| |||||||| |||||||||||    
T  3120969 atcaacattacttcattcttgaattcctcaacaccttgaaccgatgttttcgaaagccttttaacagcaat 3120899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 25810380 - 25810212
Alignment:
Q  18 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25810380 ttttcatcttgttgaatagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttcctt 25810281  T
Q  118 gtcccgatgttttagaaagcctcttaacagcaatctcttggccgtctaccagtacggcctagtcatatt 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  25810280 gtcctgatgttttagaaagcctcttaacagcaatctcttggccgtctaccattacgtcctagtcatatt 25810212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 3979410 - 3979476
Alignment:
Q  42 ccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcct 108  Q
    ||||||||||| ||||||||||||||||||||| | || ||||||    ||||||||||||| ||||    
T  3979410 ccaagaagtttgacaagattacggtgttgaagtttggcaatcaacgccgcttcatttttgaattcct 3979476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 23285660 - 23285730
Alignment:
Q  39 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 109  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||||||   ||||||||||| ||||||||    
T  23285660 caaccaagaagcttcacaagattacggtgttgaagttttgcaatcaacacaacttcatttttaaactcctc 23285730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 23392905 - 23392835
Alignment:
Q  39 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 109  Q
    ||||||||||| || ||||||||||||||||||||| | || ||||||   ||||||||||| ||||||||    
T  23392905 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 23392835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 19398767 - 19398702
Alignment:
Q  92 ttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttg 157  Q
    |||||||||||| ||| || |||||||||| |||||||| |||||||| || |||||||| |||||    
T  19398767 ttcatttttgaattccacaattccttgtccagatgttttcgaaagcctttttacagcaatttcttg 19398702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 19415123 - 19415058
Alignment:
Q  92 ttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttg 157  Q
    |||||||||||| ||| || |||||||||| |||||||| |||||||| || |||||||| |||||    
T  19415123 ttcatttttgaattccacaattccttgtccagatgttttcgaaagcctttttacagcaatttcttg 19415058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 4120878 - 4120915
Alignment:
Q  37 aacaaccaagaagttttacaagattacggtgttgaagt 74  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  4120878 aacaaccaagaagtcttacaagattacgatgttgaagt 4120915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 34328599 - 34328536
Alignment:
Q  37 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcattttt 100  Q
    ||||||||||||| ||||||||||| |||||||||||| | || ||||| |||||||| |||||    
T  34328599 aacaaccaagaagctttacaagatttcggtgttgaagtttcgcaatcaattttacttcgttttt 34328536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 20063004 - 20063045
Alignment:
Q  32 aatagaacaaccaagaagttttacaagattacggtgttgaag 73  Q
    |||| |||| ||||||||| ||||||||||||||||||||||    
T  20063004 aatacaacagccaagaagtcttacaagattacggtgttgaag 20063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 20279151 - 20279110
Alignment:
Q  32 aatagaacaaccaagaagttttacaagattacggtgttgaag 73  Q
    |||| |||||||||||||||| |||||||| |||||||||||    
T  20279151 aatacaacaaccaagaagtttaacaagattgcggtgttgaag 20279110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 31732753 - 31732684
Alignment:
Q  37 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactc 106  Q
    ||||||| || || ||||| ||||| |||||||||||| |||| || | ||||||||||||| |||||||    
T  31732753 aacaacctagcagctttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactc 31732684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 31745654 - 31745585
Alignment:
Q  37 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactc 106  Q
    ||||||| || || ||||| ||||| |||||||||||| |||| || | ||||||||||||| |||||||    
T  31745654 aacaacctagcagctttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactc 31745585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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