View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14753_low_1 (Length: 514)

Name: NF14753_low_1
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14753_low_1
NF14753_low_1
[»] chr4 (3 HSPs)
chr4 (20-236)||(1326225-1326432)
chr4 (24-140)||(4875907-4876020)
chr4 (46-140)||(44185371-44185462)
[»] chr3 (1 HSPs)
chr3 (24-136)||(5387503-5387612)
[»] scaffold0831 (1 HSPs)
scaffold0831 (20-103)||(2167-2250)
[»] chr8 (5 HSPs)
chr8 (25-76)||(6116952-6117003)
chr8 (25-76)||(12704852-12704903)
chr8 (25-73)||(12712726-12712774)
chr8 (36-85)||(18095540-18095589)
chr8 (33-85)||(12721475-12721527)
[»] chr5 (2 HSPs)
chr5 (53-96)||(24654573-24654616)
chr5 (53-96)||(29417741-29417784)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 1326432 - 1326225
Alignment:
Q  20 gcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttactgttgttactaaccttg 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||   |||||||||    
T  1326432 gcatgcacacgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcagcaatatagctagtgttg---ctaaccttg 1326336  T
Q  120 tcactttttgtagccatggatggatttctttgccaaagctgaagctaattctctgtgagtgtgcaatgcaaatatggagtgctttgttttgtgacaaacg 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||||| |||      ||| ||||||||||||||||||     
T  1326335 tcactttttgtagccatggatggatttctttgtcaaagctgaagccaattctctgtaagcgtgcaatccaa------agtactttgttttgtgacaaaca 1326242  T
Q  220 aaacggttgggagctta 236  Q
    ||||||||| |||||||    
T  1326241 aaacggttgtgagctta 1326225  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 4876020 - 4875907
Alignment:
Q  24 gcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttactgttgttactaaccttgtcac 123  Q
    |||||||||||||  |||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||| |||    |||||||||||||||||    
T  4876020 gcacatgtaaatcaattgagagattggaggggtaatttggaaagaatagaaaaggaaatgtcatcgggaatatagctac---ggttactaaccttgtcac 4875924  T
Q  124 tttttgtagccatggat 140  Q
    |||||||||||||||||    
T  4875923 tttttgtagccatggat 4875907  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 44185462 - 44185371
Alignment:
Q  46 atttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttactgttgttactaaccttgtcactttttgtagccatggat 140  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||||| |||    ||||||||||||||||||||||||||||||||||    
T  44185462 atttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctac---ggttactaaccttgtcactttttgtagccatggat 44185371  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 5387612 - 5387503
Alignment:
Q  24 gcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttactgttgttactaaccttgtcac 123  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||||||   ||||||||||||||||||    
T  5387612 gcacaggtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaaggaaatgtcatcggaaatatagttac---tgttactaaccttgtcac 5387516  T
Q  124 tttttgtagccat 136  Q
    |||||||||||||    
T  5387515 tttttgtagccat 5387503  T

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Target: scaffold0831 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 2167 - 2250
Alignment:
Q  20 gcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttact 103  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||| | ||||  ||||||||  || ||||||| |||||||||    
T  2167 gcatgcacaagtaaatcgcttgagagatttaagaggtagtttggagaaaataacgaaggaaacatcgtcaggaacatagttact 2250  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 6117003 - 6116952
Alignment:
Q  25 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaa 76  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  6117003 cacatgtgaatcgtttgagggatttaagaggcaatttggaaagaatagagaa 6116952  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 12704903 - 12704852
Alignment:
Q  25 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaa 76  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  12704903 cacatgtgaatcgtttgagggatttaagaggcaatttggaaagaatagagaa 12704852  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 12712726 - 12712774
Alignment:
Q  25 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaataga 73  Q
    ||||||| ||||||||||| ||||||||||| | |||||||||||||||    
T  12712726 cacatgtgaatcgtttgagtgatttgagaggcagtttggaaagaataga 12712774  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 18095589 - 18095540
Alignment:
Q  36 cgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtc 85  Q
    |||||||| |||||||||||||||||||| ||||| ||||| | ||||||    
T  18095589 cgtttgagtgatttgagaggtaatttggagagaatggagaaagcaatgtc 18095540  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 12721527 - 12721475
Alignment:
Q  33 aatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtc 85  Q
    ||||||||||||||||| || || |||||||| ||||||||||| | ||||||    
T  12721527 aatcgtttgagagatttaagcggcaatttggagagaatagagaaagcaatgtc 12721475  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 24654616 - 24654573
Alignment:
Q  53 aggtaatttggaaagaatagagaaggaaatgtcatcaggaatat 96  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  24654616 aggtaatttggaaagaatagagaaggaaagatcattaggaatat 24654573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 29417741 - 29417784
Alignment:
Q  53 aggtaatttggaaagaatagagaaggaaatgtcatcaggaatat 96  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  29417741 aggtaatttggaaagaatagagaaggaaagatcattaggaatat 29417784  T

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