View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14753_low_2 (Length: 473)

Name: NF14753_low_2
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14753_low_2
NF14753_low_2
[»] scaffold0026 (2 HSPs)
scaffold0026 (122-461)||(12534-12872)
scaffold0026 (16-65)||(12437-12486)
[»] scaffold0634 (1 HSPs)
scaffold0634 (51-461)||(2747-3156)
[»] chr2 (18 HSPs)
chr2 (19-461)||(26582856-26583313)
chr2 (123-461)||(23168954-23169294)
chr2 (123-461)||(23580211-23580551)
chr2 (91-350)||(23062869-23063127)
chr2 (50-162)||(23089594-23089706)
chr2 (58-158)||(23878325-23878425)
chr2 (22-162)||(23101994-23102134)
chr2 (101-252)||(26884489-26884639)
chr2 (90-235)||(24660876-24661021)
chr2 (47-162)||(21907750-21907865)
chr2 (16-153)||(5706610-5706759)
chr2 (81-186)||(25181503-25181606)
chr2 (81-162)||(29281368-29281449)
chr2 (13-111)||(23264515-23264613)
chr2 (81-153)||(9957-10029)
chr2 (122-350)||(23264301-23264524)
chr2 (90-162)||(27208322-27208394)
chr2 (90-162)||(27210657-27210729)
[»] chr6 (26 HSPs)
chr6 (19-461)||(29614738-29615195)
chr6 (91-376)||(25396343-25396627)
chr6 (52-162)||(18799822-18799932)
chr6 (344-460)||(19786751-19786866)
chr6 (50-162)||(21565751-21565863)
chr6 (344-460)||(12167420-12167535)
chr6 (16-200)||(12167637-12167832)
chr6 (16-200)||(19286546-19286741)
chr6 (344-460)||(19877513-19877628)
chr6 (87-200)||(19877730-19877842)
chr6 (344-460)||(19883289-19883404)
chr6 (344-460)||(19286329-19286444)
chr6 (87-200)||(19786538-19786650)
chr6 (16-200)||(19883506-19883701)
chr6 (101-252)||(19300359-19300509)
chr6 (16-153)||(34640575-34640724)
chr6 (16-153)||(34647249-34647398)
chr6 (90-224)||(19471946-19472079)
chr6 (16-111)||(24513370-24513465)
chr6 (87-162)||(25470373-25470448)
chr6 (81-153)||(20008550-20008622)
chr6 (18-65)||(21365067-21365114)
chr6 (18-65)||(23969049-23969096)
chr6 (16-65)||(19786455-19786504)
chr6 (16-65)||(25470290-25470339)
chr6 (122-185)||(9186841-9186903)
[»] chr3 (17 HSPs)
chr3 (87-460)||(41455769-41456142)
chr3 (95-457)||(18914193-18914553)
chr3 (335-392)||(18136117-18136174)
chr3 (22-162)||(55499658-55499798)
chr3 (52-162)||(16802029-16802139)
chr3 (19-152)||(24192274-24192418)
chr3 (71-253)||(13324381-13324562)
chr3 (122-253)||(13302844-13302974)
chr3 (122-253)||(13313520-13313650)
chr3 (339-392)||(18129607-18129660)
chr3 (81-162)||(14865216-14865298)
chr3 (401-457)||(18136249-18136306)
chr3 (283-387)||(9533232-9533335)
chr3 (17-65)||(10390034-10390082)
chr3 (17-65)||(10415123-10415171)
chr3 (17-65)||(10421793-10421841)
chr3 (402-457)||(18129736-18129792)
[»] scaffold0029 (4 HSPs)
scaffold0029 (122-461)||(110939-111284)
scaffold0029 (19-65)||(111332-111378)
scaffold0029 (81-158)||(91804-91881)
scaffold0029 (81-158)||(97530-97607)
[»] scaffold0456 (6 HSPs)
scaffold0456 (122-289)||(241-407)
scaffold0456 (122-289)||(7386-7552)
scaffold0456 (16-65)||(455-504)
scaffold0456 (16-65)||(7600-7649)
scaffold0456 (16-100)||(409-504)
scaffold0456 (16-100)||(7554-7649)
[»] chr7 (22 HSPs)
chr7 (19-461)||(13123506-13123967)
chr7 (69-325)||(13742860-13743112)
chr7 (81-461)||(12710508-12710896)
chr7 (13-235)||(16676623-16676845)
chr7 (13-235)||(17650859-17651081)
chr7 (344-461)||(13742686-13742803)
chr7 (16-200)||(13006706-13006901)
chr7 (91-329)||(46625166-46625403)
chr7 (344-460)||(13006489-13006604)
chr7 (91-350)||(13678649-13678906)
chr7 (52-162)||(11389910-11390020)
chr7 (92-151)||(12591318-12591377)
chr7 (58-136)||(20311631-20311709)
chr7 (70-185)||(11383440-11383554)
chr7 (90-162)||(14320243-14320315)
chr7 (296-387)||(18607248-18607339)
chr7 (81-162)||(16090457-16090538)
chr7 (283-387)||(147453-147556)
chr7 (333-387)||(16475929-16475983)
chr7 (16-65)||(12591230-12591279)
chr7 (18-65)||(3857953-3858001)
chr7 (348-392)||(13318007-13318051)
[»] chr4 (12 HSPs)
chr4 (16-461)||(8046420-8046893)
chr4 (13-136)||(15407485-15407608)
chr4 (335-392)||(14555881-14555938)
chr4 (50-152)||(14486052-14486154)
chr4 (101-186)||(11847453-11847537)
chr4 (190-253)||(14485975-14486037)
chr4 (16-153)||(53483022-53483171)
chr4 (91-183)||(15244566-15244658)
chr4 (81-162)||(16147433-16147514)
chr4 (283-384)||(18212523-18212623)
chr4 (69-186)||(27905613-27905729)
chr4 (91-183)||(15307471-15307563)
[»] scaffold0117 (1 HSPs)
scaffold0117 (19-461)||(9167-9628)
[»] scaffold0249 (2 HSPs)
scaffold0249 (241-392)||(7517-7667)
scaffold0249 (401-457)||(7742-7798)
[»] chr8 (12 HSPs)
chr8 (81-461)||(23865615-23866005)
chr8 (344-461)||(19902808-19902924)
chr8 (13-136)||(14057148-14057271)
chr8 (13-136)||(25111385-25111508)
chr8 (335-390)||(19987990-19988045)
chr8 (91-350)||(18613409-18613664)
chr8 (81-186)||(24321273-24321376)
chr8 (91-235)||(21931018-21931162)
chr8 (336-386)||(20005423-20005473)
chr8 (16-65)||(17054011-17054060)
chr8 (408-457)||(20005563-20005612)
chr8 (369-460)||(17053780-17053870)
[»] scaffold1773 (2 HSPs)
scaffold1773 (81-329)||(324-571)
scaffold1773 (344-461)||(153-269)
[»] scaffold0247 (1 HSPs)
scaffold0247 (16-162)||(10683-10829)
[»] scaffold0154 (1 HSPs)
scaffold0154 (90-240)||(30194-30344)
[»] scaffold0053 (2 HSPs)
scaffold0053 (91-348)||(81826-82082)
scaffold0053 (81-162)||(80093-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (34-350)||(116052-116366)
scaffold0004 (47-235)||(129204-129393)
[»] scaffold0028 (2 HSPs)
scaffold0028 (47-375)||(65265-65592)
scaffold0028 (267-329)||(1274-1336)
[»] chr5 (13 HSPs)
chr5 (16-460)||(23527632-23528099)
chr5 (335-392)||(22232436-22232493)
chr5 (90-222)||(18408553-18408685)
chr5 (81-186)||(22460506-22460609)
chr5 (81-140)||(19236294-19236353)
chr5 (87-186)||(34829432-34829530)
chr5 (87-178)||(20781102-20781192)
chr5 (52-111)||(22439310-22439369)
chr5 (283-350)||(23112480-23112546)
chr5 (16-65)||(20819640-20819689)
chr5 (16-65)||(20826740-20826789)
chr5 (401-457)||(22232568-22232625)
chr5 (81-186)||(22467130-22467233)
[»] scaffold0461 (2 HSPs)
scaffold0461 (13-185)||(581-752)
scaffold0461 (101-185)||(7605-7688)
[»] scaffold0138 (1 HSPs)
scaffold0138 (91-235)||(1117-1261)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-152)||(14977-15121)
[»] chr1 (13 HSPs)
chr1 (13-185)||(18712098-18712270)
chr1 (335-392)||(20941657-20941714)
chr1 (344-460)||(41110997-41111112)
chr1 (87-200)||(41111214-41111326)
chr1 (101-252)||(19961472-19961622)
chr1 (60-186)||(21710167-21710292)
chr1 (81-186)||(20851735-20851838)
chr1 (81-186)||(21705625-21705728)
chr1 (81-153)||(20858362-20858434)
chr1 (122-350)||(11157328-11157554)
chr1 (283-387)||(20438224-20438327)
chr1 (402-457)||(23631145-23631200)
chr1 (401-457)||(20941789-20941846)
[»] scaffold0139 (1 HSPs)
scaffold0139 (12-350)||(15521-15856)
[»] scaffold0124 (1 HSPs)
scaffold0124 (13-162)||(34861-35010)
[»] scaffold0001 (2 HSPs)
scaffold0001 (344-461)||(174440-174557)
scaffold0001 (101-252)||(493650-493800)
[»] scaffold1061 (1 HSPs)
scaffold1061 (122-329)||(1607-1813)
[»] scaffold0348 (2 HSPs)
scaffold0348 (335-392)||(1527-1584)
scaffold0348 (401-457)||(1659-1716)
[»] scaffold0317 (1 HSPs)
scaffold0317 (91-350)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (19-136)||(6907-7024)
[»] scaffold0235 (2 HSPs)
scaffold0235 (26-185)||(15475-15633)
scaffold0235 (26-162)||(23192-23328)
[»] scaffold0077 (3 HSPs)
scaffold0077 (340-392)||(17972-18024)
scaffold0077 (340-392)||(23605-23657)
scaffold0077 (22-150)||(4153-4281)
[»] scaffold0090 (1 HSPs)
scaffold0090 (81-209)||(17492-17620)
[»] scaffold0085 (1 HSPs)
scaffold0085 (81-186)||(4274-4377)
[»] scaffold0261 (1 HSPs)
scaffold0261 (87-252)||(24178-24342)
[»] scaffold0222 (1 HSPs)
scaffold0222 (90-222)||(16083-16215)
[»] scaffold0031 (2 HSPs)
scaffold0031 (91-235)||(121200-121344)
scaffold0031 (91-235)||(132077-132221)
[»] scaffold0476 (1 HSPs)
scaffold0476 (74-162)||(3887-3975)
[»] scaffold0232 (1 HSPs)
scaffold0232 (128-235)||(19059-19166)
[»] scaffold0020 (1 HSPs)
scaffold0020 (50-350)||(102489-102787)
[»] scaffold0034 (1 HSPs)
scaffold0034 (69-186)||(72631-72747)
[»] scaffold0720 (1 HSPs)
scaffold0720 (51-186)||(3831-3966)
[»] scaffold0337 (1 HSPs)
scaffold0337 (283-387)||(9950-10053)
[»] scaffold0107 (1 HSPs)
scaffold0107 (13-136)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (122-224)||(51555-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (101-186)||(11631-11715)
[»] scaffold0206 (1 HSPs)
scaffold0206 (101-162)||(18060-18121)
[»] scaffold1427 (1 HSPs)
scaffold1427 (283-350)||(1207-1273)
[»] scaffold0453 (1 HSPs)
scaffold0453 (123-186)||(11196-11258)
[»] scaffold0106 (2 HSPs)
scaffold0106 (395-457)||(46685-46748)
scaffold0106 (395-457)||(50958-51021)
[»] scaffold0169 (1 HSPs)
scaffold0169 (191-235)||(6299-6343)
[»] scaffold0023 (1 HSPs)
scaffold0023 (122-186)||(134820-134882)


Alignment Details
Target: scaffold0026 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 122 - 461
Target Start/End: Original strand, 12534 - 12872
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  222 atatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12634 atatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgattgagtaagaaatcaagtg 12733  T
Q  322 aatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaa 421  Q
    ||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||     
T  12734 aatgtataa-ctattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaagtcatatgag 12832  T
Q  422 atatatgtgtagttaagttgtatgtagatatacacaggtt 461  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  12833 atatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 12437 - 12486
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaa 12486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 51 - 461
Target Start/End: Complemental strand, 3156 - 2747
Alignment:
Q  51 gttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 150  Q
    |||||||||||||||   | |||||||   |||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3156 gttcgctcaagcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 3057  T
Q  151 cctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatccta 250  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| |    
T  3056 cctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatccca 2957  T
Q  251 ctagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||    
T  2956 ctagaacaagccggtgatcgaattggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatg 2858  T
Q  351 tatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtaga 449  Q
    |||| |||||||||||| ||||||| |||||||||||||||| | | || |||||||||||||||||||||| ||||||  ||||| |||||||||||||    
T  2857 tatgcgcataattataaataattgtctatgttctggattgtttg-agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtaga 2759  T
Q  450 tatacacaggtt 461  Q
    ||||||||||||    
T  2758 tatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 26583313 - 26582856
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||         |||  ||||||||| | |||||||||| ||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  208 ttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
    ||| ||||||| ||||| |||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| ||||||| ||| || ||||||||||||    
T  26583113 ttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttggagatgattgag 26583014  T
Q  308 tatgaaatcaagtgaatat----ataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 403  Q
    ||||||||| |||||||||    ||||  | | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | | || |||    
T  26583013 tatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgtttg-agttgcgg 26582915  T
Q  404 agtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  26582914 agtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 123 - 461
Target Start/End: Original strand, 23168954 - 23169294
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  222 atatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    ||| ||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  322 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 419  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23169153 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23169251  T
Q  420 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23169252 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 123 - 461
Target Start/End: Original strand, 23580211 - 23580551
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  222 atatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    ||| ||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  322 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 419  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23580410 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23580508  T
Q  420 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23580509 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 23063127 - 23062869
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtg 288  Q
    |||||||||  |||||||||| || |||||||||| ||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  ||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtg 23062930  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || ||| ||||||||||||||||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062929 aa-tttggagatgattgagtatgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 23089594 - 23089706
Alignment:
Q  50 agttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    |||||||||||||||| | ||||||||||| |||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  23089594 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 23089693  T
Q  150 gcctctttttgaa 162  Q
    ||| |||||||||    
T  23089694 gccactttttgaa 23089706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 23878425 - 23878325
Alignment:
Q  58 caagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 156  Q
    |||||||| | ||||||||||| |||||||| | |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||    
T  23878425 caagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactt 23878327  T
Q  157 tt 158  Q
    ||    
T  23878326 tt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 23101994 - 23102134
Alignment:
Q  22 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatct 121  Q
    |||||||||||  ||||||||||  |  |||||||| ||||||| | ||||||||||| |||||||| | |||||||||| || |||||| |||||        
T  23101994 agcgaaaaaccaatttgattctgccaagagttcgcttaagcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggac 23102093  T
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    ||||||||||||||||   |||||||||||| |||||||||    
T  23102094 gtcgcttaagcgaagttgaccttagtcagccactttttgaa 23102134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 26884639 - 26884489
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  200 taaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctact 252  Q
    | ||||||||| |||| |||||||| | |||||||||| |||| |||||||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 24661021 - 24660876
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| ||||||||| |||| |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaa-ttttacttcgtgcactaggggatcct 24660923  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
     ||||||||| ||||||||||| || |||||||||| || |||||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 21907865 - 21907750
Alignment:
Q  47 agaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagcctta 145  Q
    ||||||||||| ||||||| | | ||||||| | ||||  || |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||    
T  21907865 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-cctta 21907767  T
Q  146 gtcagcctctttttgaa 162  Q
    ||||||| |||||||||    
T  21907766 gtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | |  |||||| ||| |||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 25181503 - 25181606
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | ||||||||||||| |    
T  25181503 acccagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcacta 25181600  T
Q  181 ggggac 186  Q
    ||||||    
T  25181601 ggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 29281449 - 29281368
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  29281449 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 23264613 - 23264515
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaag 111  Q
    ||||| || ||||||||| | |||| ||| ||| ||||||||||||||||||| | | |||||||   |||| |||  |||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcgagcgaaaccccgactctctgtaagccggtcgcttaag 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 10029 - 9957
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10029 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 350
Target Start/End: Complemental strand, 23264524 - 23264301
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 219  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  220 gtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 319  Q
    ||||| || || ||||     |  |||||||| | ||| |  |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| ||||    
T  23264426 gtataacctttatata---cactaaatcctaccaaaac-acttggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaag 23264332  T
Q  320 tgaatatataatttattgaatgaaattgatg 350  Q
    |||| ||||| | | ||||||||| ||||||    
T  23264331 tgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 29614738 - 29615195
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||         |||  ||||||||| | |||||||||| ||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  208 ttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
    ||||||||||| ||||| |||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| ||||||| ||| || ||||||||||||    
T  29614935 ttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagatgattgag 29615034  T
Q  308 tatgaaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattt 399  Q
    ||||||| |||||||        ||||||||  | | |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||   | ||    
T  29615035 tatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gagtt 29615132  T
Q  400 tcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
     ||||| |||||||||||||||| ||||||  ||||  |||||||||||||||||||||||||    
T  29615133 gcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 91 - 376
Target Start/End: Complemental strand, 25396627 - 25396343
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||||| || ||||||||||| | |||| |||||| |||| | | |     
T  25396627 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcaaccactttttgaattat-gcttagtgcactagggaatcctt 25396529  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    ||||||||||||||||||||| || |||||||||| |||||||||| | | | ||||||||||  ||||   |||| ||||||||||||||  |||||||    
T  25396528 ttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctactgaaacacattggtaatcgaattggttgaatttagtga 25396430  T
Q  290 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtg 376  Q
    ||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |||||| ||  | || ||||| ||||||||||    
T  25396429 attttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaacttgatgcattagtatgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 18799932 - 18799822
Alignment:
Q  52 ttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 151  Q
    |||||| ||||||| | ||||||||| | |||||||| | |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||    
T  18799932 ttcgcttaagcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagc 18799833  T
Q  152 ctctttttgaa 162  Q
    | |||||||||    
T  18799832 cactttttgaa 18799822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 460
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| |||||  ||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 21565751 - 21565863
Alignment:
Q  50 agttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    |||||||||||||||| | ||||||||||| |||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  21565751 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 21565850  T
Q  150 gcctctttttgaa 162  Q
    ||| |||||||||    
T  21565851 gccactttttgaa 21565863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccag-accttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||         |||  ||||||| | | |||||| |||| |||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccag-accttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||         |||  ||||||| | | |||||| |||| |||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 19877842 - 19877730
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  19877842 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 19877744  T
Q  187 ttcttgagcattct 200  Q
    ||||||||| ||||    
T  19877743 ttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 19786538 - 19786650
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  |||| ||||||||    
T  19786538 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgcatgaggggac 19786636  T
Q  187 ttcttgagcattct 200  Q
    ||||||||| ||||    
T  19786637 ttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccag-accttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||         |||  ||||||| | | |||||| |||| |||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 19300359 - 19300509
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19300359 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19300457  T
Q  200 taaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctact 252  Q
    | || |||||| |||| |||||||| |||||||||||| |||| |||||||||    
T  19300458 ttaagtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | |  |||||| ||| |||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | |  |||||| ||| |||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 19471946 - 19472079
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||||||||||| ||||||||||| |||||| | |    
T  19471946 ttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccactttttgaatttt-gcttcgtgcactaggggatcct 19472043  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtata 224  Q
     ||||||||| | |||||||||||| ||||||||||    
T  19472044 tttgagcattttgaaatgtttccttcaacttgtata 19472079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 24513370 - 24513465
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaag 111  Q
    ||||| ||||||||| | |||| |||||   ||||||||||||||||||| | | ||||||| | ||||| || |||||| |||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaag 24513465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 25470373 - 25470448
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||| |||||||  ||||||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470373 acctactgtaagttggtcgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 20008550 - 20008622
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008550 acccagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 21365067 - 21365114
Alignment:
Q  18 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaa 21365114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 23969049 - 23969096
Alignment:
Q  18 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaa 23969096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 19786455 - 19786504
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaa 19786504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 25470290 - 25470339
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| ||||||||||||   || ||||||||||||||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaa 25470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 87 - 460
Target Start/End: Original strand, 41455769 - 41456142
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| ||| |||| | |||||| ||||| ||||||||    
T  41455769 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgcatgaggggac 41455868  T
Q  187 ttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttag 286  Q
    ||| ||||| ||||  ||  |   ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||    
T  41455869 ttcctgagcgttctttaacttcctctttaacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaattgattggtgttag 41455968  T
Q  287 tgaatttttgagatgattgagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctg 385  Q
    | ||| || ||||| |||||||| ||| || ||||||||||| ||  |||||||||||||||||||| | |||||||||||| |||||||| ||||||||    
T  41455969 taaatgttggagataattgagtaggaagattaagtgaatatacaa-ctattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctg 41456067  T
Q  386 gattgttagaattttcggagtagtaagtcatatgaaatatatg-tgtagttaagttgtatgtagatatacacaggt 460  Q
     |||||| | | || |||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||||||    
T  41456068 aattgtttg-agttacggagtagtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 95 - 457
Target Start/End: Complemental strand, 18914553 - 18914193
Alignment:
Q  95 taagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttg 192  Q
    ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||  |||||| | | |||    
T  18914553 taagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccactttt-gaatttttgcctcgtgcattaggggatccttttg 18914456  T
Q  193 agcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatt 292  Q
    |||||   | ||| |||| |  |||||||||| || || ||||   | || |||||||||| ||||  ||  |||| ||||| |||||||||||||||||    
T  18914455 agcatataataatatttcttccaacttgtataacctttatatataca-cataatcctactaaaacactctattgatggaattagttgatgttagtgaatt 18914357  T
Q  293 tttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    || |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18914356 ttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18914257  T
Q  393 agaattttcggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 457  Q
     ||| || |||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  18914256 ggaa-ttgcggagttgtaagtcatatgaaacatatgtattgttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 55499658 - 55499798
Alignment:
Q  22 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatct 121  Q
    |||||||||||  ||||||||||  |  ||||||||||| |||| | ||||||||||| ||| |||| | |||||||||||||||||||| ||||||       
T  55499658 agcgaaaaaccaatttgattctgccaagagttcgctcaaacgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagac 55499757  T
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    ||||||||||||||||    ||||||||||| |||||||||    
T  55499758 gtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 16802029 - 16802139
Alignment:
Q  52 ttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 151  Q
    |||||||||||||| | ||||||||||| |||||||| | |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||    
T  16802029 ttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagc 16802128  T
Q  152 ctctttttgaa 162  Q
    | |||||||||    
T  16802129 cactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa----------acc-taagcgagcaggacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||          ||| |||| |||  | |||||||| | ||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 152  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 13324381 - 13324562
Alignment:
Q  71 agcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgct 170  Q
    ||||||||  ||||| || ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| |||||||    
T  13324381 agcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgct 13324479  T
Q  171 tcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctacta 253  Q
    |||||||  |||||| | | |||||||||| || ||||||| || | ||| |||| |||||||||||||| || ||||||||||    
T  13324480 tcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 220  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  221 tatatcccttgtataggtatcagaatcctacta 253  Q
    |||| |||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 220  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  221 tatatcccttgtataggtatcagaatcctacta 253  Q
    |||| |||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  339 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 14865298 - 14865216
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctg-tcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||||||| || ||||| ||||||||||| |||||| | | ||||||||||||| ||||  ||||||||||| ||| ||||    
T  14865298 acccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttctgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 18136249 - 18136306
Alignment:
Q  401 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 457  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  18136249 cggagttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 9533335 - 9533232
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  9533335 ttagtgaatttg-gagatgattgagtatgaaactaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 9533237  T
Q  383 ctgga 387  Q
    |||||    
T  9533236 ctgga 9533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10390034 - 10390082
Alignment:
Q  17 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    |||||||||||||||| ||||||||||||   || ||||||||||||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaa 10390082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10415123 - 10415171
Alignment:
Q  17 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    |||||||||||||||| ||||||||||||   || ||||||||||||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaa 10415171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10421793 - 10421841
Alignment:
Q  17 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    |||||||||||||||| ||||||||||||   || ||||||||||||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaa 10421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 457
Target Start/End: Original strand, 18129736 - 18129792
Alignment:
Q  402 ggagtagtaagtcatatgaaata-tatgtgtagttaagttgtatgtagatatacaca 457  Q
    ||||| ||||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  18129736 ggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 461
Target Start/End: Complemental strand, 111284 - 110939
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  222 atatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 321  Q
    ||| |||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |||||||| ||||||    
T  111185 ataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtgtatgaaaacaagtg 111086  T
Q  322 a--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagt 413  Q
    |        ||||||||  | | |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||| | || || | ||||||||||||    
T  111085 aatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattg-tcgagttgt-ggagtagtaagt 110988  T
Q  414 catatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  110987 catatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 111378 - 111332
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaa 111332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 91804 - 91881
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    |||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  91804 acccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 97530 - 97607
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 158  Q
    |||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  97530 acccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 116; Significance: 8e-59; HSPs: 6)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 407 - 241
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  222 atatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    |||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  308 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 7552 - 7386
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 221  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  222 atatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    |||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7453 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 504 - 455
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaa 455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7649 - 7600
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaa 7600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 504 - 409
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaacctaagcgagcaggacccagaccttctgtaagcc 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| |||| ||||||||||||| |||||||| |||||||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 7649 - 7554
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaacctaagcgagcaggacccagaccttctgtaagcc 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| |||| ||||||||||||| |||||||| |||||||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 13123506 - 13123967
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | | |||||||||| |||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||  |    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataactt 13123704  T
Q  208 ttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
       |||||||| ||||| || | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |    
T  13123705 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtg 13123804  T
Q  308 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 397  Q
    |||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || |    
T  13123805 tatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagt 13123903  T
Q  398 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13123904 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 69 - 325
Target Start/End: Complemental strand, 13743112 - 13742860
Alignment:
Q  69 taagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 168  Q
    ||||||||| | |||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||   || |||| |||||    
T  13743112 taagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttg 13743016  T
Q  169 cttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgat 268  Q
     |||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||| |||| || |||||| | |||||||| |||||| ||| |  |||    
T  13743015 tttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaacgagccgaggat 13742916  T
Q  269 cgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata 325  Q
     | |||  ||| ||||||| ||| || ||| |||||| |||||||| ||||||||||    
T  13742915 tggattaattggtgttagt-aatgttggaggtgattgtgtatgaaaacaagtgaata 13742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 81 - 461
Target Start/End: Original strand, 12710508 - 12710896
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||    
T  12710508 acccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatga 12710606  T
Q  181 ggggacttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttga 280  Q
    ||||||||||||||||||||| ||  |   |||||||| ||||| || | || ||||||  |||| |||| || ||||||| |||||| | |||| |||     
T  12710607 ggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgattggattgattgg 12710706  T
Q  281 tgttagtgaatttttgagatgattgagtatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataatta 370  Q
    | ||||| ||| || | | |||||| ||||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||    
T  12710707 tattagtaaatgttggtgttgattgtgtatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaata 12710806  T
Q  371 attgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||| |||| | || || | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  12710807 attgtgtatgttctgaattg-tcgagttat-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 16676845 - 16676623
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||| | ||||||||| | |||||||| | ||||||||||||||||||||     
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 16676746  T
Q  113 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 211  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  16676745 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 16676647  T
Q  212 tttaacttgtatatcccttgtata 235  Q
    || |||||||||| ||||| ||||    
T  16676646 ttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 17651081 - 17650859
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||| | ||||||||| | |||||||| | ||||||||||||||||||||     
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 17650982  T
Q  113 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 211  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  17650981 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 17650883  T
Q  212 tttaacttgtatatcccttgtata 235  Q
    || |||||||||| ||||| ||||    
T  17650882 ttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 344 - 461
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  ||||  ||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  443 atgtagatatacacaggtt 461  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccag-accttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||         |||  ||||||| | | |||||| |||| |||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 200  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 329
Target Start/End: Complemental strand, 46625403 - 46625166
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    ||||||||| ||||||||||| || |||||||||  |||| ||||| | | |  |||||||||  ||||   |||| || |||||||||||   ||||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccctggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtga 46625206  T
Q  290 atttttgagatgattgagtatgaaatcaagtgaatatata 329  Q
    |||||  | |||||||||||||||| ||| ||||||||||    
T  46625205 attttgaatatgattgagtatgaaaccaaatgaatatata 46625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 13678906 - 13678649
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 288  Q
     |||||||||  |||||||||| || || ||||||| || || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 13678710  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  13678709 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 11389910 - 11390020
Alignment:
Q  52 ttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcag 150  Q
    |||||||||||||| | ||||||||| | |||||||| | |||| || |||||||||||| || ||| | ||||||||||||||| ||| ||||||||||    
T  11389910 ttcgctcaagcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcag 11390008  T
Q  151 cctctttttgaa 162  Q
    || |||||||||    
T  11390009 ccactttttgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 12591318 - 12591377
Alignment:
Q  92 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 151  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591318 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 20311631 - 20311709
Alignment:
Q  58 caagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 136  Q
    |||||||| | ||||||||||| |||||||| | ||| |||||||||||||||| || ||| | |||||||||||||||    
T  20311631 caagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  70 aagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 168  Q
    |||||||| | |||||||| | |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  169 cttcgtgcacgagggga 185  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  296 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 387  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 16090538 - 16090457
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  16090538 acccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 147556 - 147453
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  147556 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 147458  T
Q  383 ctgga 387  Q
    |||||    
T  147457 ctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  333 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 387  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 12591230 - 12591279
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| ||||||||||||   || ||||||||||||||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaa 12591279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 3857953 - 3858001
Alignment:
Q  18 tgtgagcgaaaaaccgtttt-gattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaa 3858001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  348 atgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 8046420 - 8046893
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccagaccttctgtaagccggtc 104  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | | |||||||||| || ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  105 gcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaa 204  Q
    ||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattctataa 8046619  T
Q  205 tgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgatt 304  Q
      |   |||||||| ||||| |||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| ||||||| ||| || |||||||||    
T  8046620 cttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgatt 8046719  T
Q  305 gagtatgaaatcaagtgaatatata-attta-----------------ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 386  Q
    | |||||||| |||||||||||||| || ||                 | |||||  |||||||| ||||||||||||||| |||||||||||| | |||    
T  8046720 gtgtatgaaaacaagtgaatatatatatatatatatatatataacatgtggaatgtgattgatgtgtgtgcataattataaataattgtgtatgatttgg 8046819  T
Q  387 attgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    |||  | || || | ||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  8046820 attact-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||| | | ||||||| | ||| |||| |||||| |||||||||||||||     
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacctagactttctgtgagccggtcgcttaagc 15407509  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    |||||  | |||||||||||||||    
T  15407508 gaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 14486154 - 14486052
Alignment:
Q  50 agttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    |||||||||||||||| | | ||||||| | ||||| ||  ||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||    
T  14486154 agttcgctcaagcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtca 14486055  T
Q  150 gcc 152  Q
    |||    
T  14486054 gcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 11847537 - 11847453
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||||    
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggac 11847453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctacta 253  Q
    ||||||||||||||||||||| || | |||||||| ||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccaga-ccttctgtaagccggt 103  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | |  |||||| ||| |||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 183  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 16147433 - 16147514
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  16147433 acccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 18212623 - 18212523
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 18212525  T
Q  383 ct 384  Q
    ||    
T  18212524 ct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 27905729 - 27905613
Alignment:
Q  69 taagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 168  Q
    ||||||||||  ||||  ||||| ||| ||| | ||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  27905729 taagcgagcaaaaccccaaccttttgtgagctgatcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 27905631  T
Q  169 cttcgtgcacgaggggac 186  Q
    |||||||||  |||||||    
T  27905630 cttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 15307563 - 15307471
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 183  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| ||||    
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactaggg 15307471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 9167 - 9628
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||         |||  ||||||| | | |||||||||| |||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 207  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||  ||  |    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattctgtaactt 9365  T
Q  208 ttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgag 307  Q
       |||||||| ||||| || | || |||||| ||||| |||| |||||||||| |||||  | |||| |||   ||||| ||| || | | |||||| |    
T  9366 cctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgactggattgattggcattagtaaatgttggtgttgattgtg 9465  T
Q  308 tatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 397  Q
    |||||||  |||||||||  |||| || |||       ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||| | || |    
T  9466 tatgaaaataagtgaatacgtatatatgtataacatgatgaatgtgattgatgtatgtgcatgattataaataattgtatatgttctggattg-tcgagt 9564  T
Q  398 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 461  Q
    | | |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  9565 tgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 392
Target Start/End: Original strand, 7517 - 7667
Alignment:
Q  241 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 340  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  341 gaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  7616 gaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  401 cggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 457  Q
    |||||| | ||||||||||||| |||||  | |||||||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 81 - 461
Target Start/End: Complemental strand, 23866005 - 23865615
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||    
T  23866005 acccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgcatga 23865906  T
Q  181 ggggacttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttga 280  Q
    ||||||||||||||||||||| ||  |   |||||||| ||||| || | || |||||| ||||| |||| |||||||||| |||||| | |||| |||     
T  23865905 ggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattgg 23865806  T
Q  281 tgttagtgaatttttgagatgattgagtatgaaatcaagtgaata----------tataatttattgaatgaaattgatgtatgtgcataattataatta 370  Q
    | ||||| ||| || |   |||||| ||||| ||  |||||||||          |||||  |   |||||  |||||||||||||||||||||||| ||    
T  23865805 tattagtaaatgttggtattgattgtgtatgtaaataagtgaatacgtgtatatgtataacatgaggaatgtgattgatgtatgtgcataattataaata 23865706  T
Q  371 attgtgtatgttctggattgttagaattttcggagtagtaagtc-atatgaaatatatg-tgtagttaagttgtatgtagatatacacaggtt 461  Q
    ||||||||||||||| ||||||   | || |||||||||||||| ||||||||||||||   ||||| |||||||||||||||||||||||||    
T  23865705 attgtgtatgttctgaattgtt--gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttgtatgtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 344 - 461
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  443 atgtagatatacacaggtt 461  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| ||||| |||||||| |||||||||||  | ||||||||||||||||| | | ||||||| | |||||||| |||||| |||||||||||||||     
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagc 14057247  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    || ||| | |||||||||||||||    
T  14057248 gagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||| | | ||||||| | |||||||| |||||| || ||||||||||||     
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagtcggtcgcttaagc 25111409  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    |||||  | |||||||||||||||    
T  25111408 gaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 390  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 18613664 - 18613409
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |||||||  ||||| |||||||| |||||| | |    
T  18613664 tctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-ttttgaa-ctttgcctcgtgcactaggggatcct 18613568  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 288  Q
    ||||||||||  |||||||| | || |||||||||| || || ||||   | | |||||||||| |||  |  |||| |||||||| |||||  ||||||    
T  18613567 cttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-gaaacacttggtaatcgaattagttgagtttagtg 18613470  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613469 aa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 24321273 - 24321376
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |    
T  24321273 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacacta 24321370  T
Q  181 ggggac 186  Q
    ||||||    
T  24321371 ggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 21931162 - 21931018
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatttttgcttcgtgcacgagggga--ct 187  Q
    |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  ||||||||| | ||| |||| |  |     
T  21931162 tctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--ttttgcttcctccactagggaatcca 21931065  T
Q  188 tcttgagcattctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
    ||| ||||||||||||||||||| || |||||||||| || |||||||    
T  21931064 tct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  336 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 386  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 17054060 - 17054011
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaa 17054011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 20005563 - 20005612
Alignment:
Q  408 gtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 457  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20005563 gtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  369 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 460  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 81 - 329
Target Start/End: Complemental strand, 571 - 324
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||    
T  571 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatga 473  T
Q  181 ggggacttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttga 280  Q
    ||||||||||||||||||||| ||  |   |||||||| ||||| || | || |||||| | |||||||| ||||||||||  ||||| | |||| |||     
T  472 ggggacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaagccagtgattggattgattgg 373  T
Q  281 tgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 329  Q
    ||||||| ||| || |||||||| | |||||||| ||||||||||||||    
T  372 tgttagtaaatgttggagatgatggtgtatgaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 344 - 461
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||| ||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  443 atgtagatatacacaggtt 461  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 10829 - 10683
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaa 115  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| ||     
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccctaagcgagcagaacccagacttactgtaagccggtcgcttaagcgag 10730  T
Q  116 ctatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    ||| | ||||||||||||||||    ||||||||||| |||||||||    
T  10729 ctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa 10683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 30344 - 30194
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-t 188  Q
    |||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||  |    
T  30344 ttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttctgaatttt-gcttcgtgcactaggggaccct 30246  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtat 240  Q
     ||||||||||||||||||||| || |||||||||| |||||||||||||||    
T  30245 tttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 91 - 348
Target Start/End: Original strand, 81826 - 82082
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 289  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtga 82023  T
Q  290 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattga 348  Q
    ||||| || ||| |||||||||||| |||||||||||||| | | ||||||||| ||||    
T  82024 attttggatatgtttgagtatgaaaccaagtgaatatatattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 80093 - 80174
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  80093 acccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 34 - 350
Target Start/End: Complemental strand, 116366 - 116052
Alignment:
Q  34 ttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg 133  Q
    |||| ||||||| ||||||||||||||||||| | | |||||||   | ||  ||  ||||||||||||||||||||| |||| | | ||||||||||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcgagcgaaatcccaactctctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcg 116267  T
Q  134 aag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtatatcccttg 231  Q
    ||| ||| ||||||||||||  |||||||| ||| || |||||||| |||||| | | ||||| ||| ||||||||||| || ||| |||||| || ||     
T  116266 aagatga-ccttagtcagccattttttgaacttt-gcctcgtgcactaggggatccttttgagtattttaaaatgtttctttcaacctgtataaccttta 116169  T
Q  232 tataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataat 331  Q
    ||||   | | ||||||||||  ||||   |||| |||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| ||||| |    
T  116168 tatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtgaatttt-gagatgattgagtatgaaatcaagtgaacatatact 116071  T
Q  332 ttattgaatgaaattgatg 350  Q
     | ||||||||| ||||||    
T  116070 atgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 129204 - 129393
Alignment:
Q  47 agaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 146  Q
    ||||||||||| ||||||| | | ||||||| | ||||  || |||||| ||||||||||||||| || | | | |||||||||||||||   | |||||    
T  129204 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttag 129303  T
Q  147 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
    |||||| ||||||||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| |||||||||| || |||||||    
T  129304 tcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 47 - 375
Target Start/End: Complemental strand, 65592 - 65265
Alignment:
Q  47 agaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 146  Q
    ||||||||||| || |||| | | ||||||| | ||||  ||  ||||||||||||||||||||| |||| | | ||| |||||||| ||    ||||||    
T  65592 agaagttcgcttaaccgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttag 65493  T
Q  147 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaa 245  Q
    |||||| ||||||||| |||||| |||||||| |||||| | | |||| |||| ||||||||||| || |||||||||| |  || |||| | | | |||    
T  65492 tcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaa 65395  T
Q  246 tcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaat 345  Q
    |||||||| ||||   |||| |||||||||||| |  |||||||||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |    
T  65394 tcctactaaaacacattggtaatcgaattggttaagtttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaact 65295  T
Q  346 tgatgtatgtgcataattataattaattgt 375  Q
    ||||| ||  | || ||||| |||||||||    
T  65294 tgatgcattagtatgattattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 1336 - 1274
Alignment:
Q  267 atcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 329  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| |||||    
T  1336 atcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatata 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 23528099 - 23527632
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa---------acc--taagcgagcaggacccag-accttctgtaagccggt 103  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||         |||  ||||||| | | |||||| |||| |||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  104 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaa 203  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||  |    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttcttta 23527901  T
Q  204 atgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgttagtgaatttttgagatga 302  Q
    |  |   |||||||| ||||| |||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| ||||||| ||| || ||||||     
T  23527900 acttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagatgt 23527801  T
Q  303 ttgagtatgaaatcaagtga------------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 390  Q
    ||| || ||||| |||||||            ||||||||  | | |||||  |||||||||||||||||||||||| |||||||||  | ||||||||     
T  23527800 ttgggtgtgaaagcaagtgaatatgtatgtatatatataacatgtggaatgtgattgatgtatgtgcataattataaataattgtgtcag-tctggatta 23527702  T
Q  391 ttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 460  Q
    || || || | ||||||||||||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  23527701 tttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 18408553 - 18408685
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact- 187  Q
    ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||||||||  ||||| |||||||| |||||| |     
T  18408553 ttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggattc 18408650  T
Q  188 tcttgagcattctaaaatgtttcctttaacttgta 222  Q
    | ||||||||| | ||||||| | || ||||||||    
T  18408651 ttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 22460609 - 22460506
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |    
T  22460609 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacacta 22460512  T
Q  181 ggggac 186  Q
    ||||||    
T  22460511 ggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 19236353 - 19236294
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 140  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236353 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 34829530 - 34829432
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||| |||||||    
T  34829530 accttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgcactaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 178  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 22439310 - 22439369
Alignment:
Q  52 ttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaag 111  Q
    |||||| ||| ||| | ||||||||||| |||||||| | ||||||||||||||||||||    
T  22439310 ttcgcttaagtgaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaag 22439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 20819689 - 20819640
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| ||||||||||||   || ||||||||||||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaa 20819640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 20826789 - 20826740
Alignment:
Q  16 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa 65  Q
    ||||||||||||||||| ||||||||||||   || ||||||||||||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaa 20826740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 22232568 - 22232625
Alignment:
Q  401 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 457  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  22232568 cggagtcgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 22467233 - 22467130
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||| ||||| |||||| | |||||||||||| | ||||  |||| |||||| ||| |||| | ||||||||| ||| |    
T  22467233 acccagacctactgtaagctggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagcct-tttctgaa-tcttgcttcgtacacta 22467136  T
Q  181 ggggac 186  Q
    ||||||    
T  22467135 ggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 581 - 752
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||| | | |||||||   ||||  || ||||||||||||||||||||||     
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcgaaaccccaactttctgtaagccggtcgcttaagc 680  T
Q  113 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  681 gaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 1261 - 1117
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
    ||||||||| ||||||||||| || |||||||||| || |||||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa----------acc-taagcgagcaggacccagaccttctgtaagccggtcgct 107  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||          ||| ||||||||| | |||||||| | ||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  108 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 152  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 18712270 - 18712098
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||| ||||| | | | ||||||| | ||||  || |||||||||| |||||||||||     
T  18712270 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgcttaagcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagc 18712171  T
Q  113 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712170 gaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  443 atgtagatatacacaggt 460  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 41111326 - 41111214
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  41111326 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 41111228  T
Q  187 ttcttgagcattct 200  Q
    ||||||||| ||||    
T  41111227 ttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 19961622 - 19961472
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  200 taaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctact 252  Q
    | |  |||||| |||| |||||||| |||||||||||| |||| |||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 21710292 - 21710167
Alignment:
Q  60 agcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 159  Q
    |||||| | ||||||| | | |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||      
T  21710292 agcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttcc 21710193  T
Q  160 gaatttttgcttcgtgcacgaggggac 186  Q
    ||| | ||||||||| ||| |||||||    
T  21710192 gaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 20851735 - 20851838
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |    
T  20851735 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacacta 20851832  T
Q  181 ggggac 186  Q
    ||||||    
T  20851833 ggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 21705728 - 21705625
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| |    
T  21705728 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacacta 21705631  T
Q  181 ggggac 186  Q
    ||||||    
T  21705630 ggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 20858362 - 20858434
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 153  Q
    |||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858362 acccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 350
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 219  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  220 gtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 319  Q
    ||||| ||||| ||||   |  | |||||||||  ||||   |||| |||||||| || ||  |||||||||||   |||||||||||||||||| ||||    
T  11157456 gtataacccttatatatacacta-aatcctactgaaacactttggtaatcgaattagtcgagtttagtgaatttga-agatgattgagtatgaaaccaag 11157359  T
Q  320 tgaatatataatttattgaatgaaattgatg 350  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 20438224 - 20438327
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 20438322  T
Q  383 ctgga 387  Q
    |||||    
T  20438323 ctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 23631200 - 23631145
Alignment:
Q  402 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 457  Q
    ||||| ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  23631200 ggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 20941789 - 20941846
Alignment:
Q  401 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 457  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  20941789 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 15521 - 15856
Alignment:
Q  12 agaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaag 111  Q
    |||||| || ||||||||| | |||  ||| ||| ||||||||||||||||||| | | ||||| |   ||||| ||  ||| |||| ||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaacgaaacccaaactctctataagacggtcgcttaag 15620  T
Q  112 tgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 209  Q
     |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||  |||||||||    
T  15621 cgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatttaaaaatgttt 15717  T
Q  210 cctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 309  Q
    | || |||||||||| || || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  |||||||||||  ||||||||||||||    
T  15718 ctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaatttg-gagatgattgagta 15815  T
Q  310 tgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    ||||| |||||||| ||||| | | ||||||||| ||||||    
T  15816 tgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 34861 - 35010
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||| | | ||||||| | |||   || ||||||||||||||||||||||     
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagc 34960  T
Q  113 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 162  Q
    |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34961 gaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 344 - 461
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  344 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 442  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  ||||  | ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  443 atgtagatatacacaggtt 461  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 493650 - 493800
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 199  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  200 taaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctact 252  Q
    | ||||||||| |||| |||||||| | |||||||||| |||| |||||||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 329
Target Start/End: Complemental strand, 1813 - 1607
Alignment:
Q  122 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 219  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  220 gtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 319  Q
    ||||  || || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | ||||||||||| ||||    
T  1715 gtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaaccaag 1617  T
Q  320 tgaatatata 329  Q
    ||||||||||    
T  1616 tgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  335 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 1659 - 1716
Alignment:
Q  401 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 457  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  1659 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 350
Target Start/End: Complemental strand, 799 - 542
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 188  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  189 cttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 288  Q
     |||||||||  |||||||||| || || ||||||| || || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 603  T
Q  289 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  602 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 7024 - 6907
Alignment:
Q  19 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaacta 118  Q
    ||||||||  |||| |||||||||||  || | || ||||||||||| | ||||||||||| |||||||| | |||||||||||||||||||| || |||    
T  7024 gtgagcgaggaacctttttgattctgccaggaatttgctcaagcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagcta 6925  T
Q  119 tctgtcgcttaagcgaag 136  Q
     | |||||||||||||||    
T  6924 gccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 15475 - 15633
Alignment:
Q  26 aaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 125  Q
    ||||||| |||| ||||||  ||||||||||||||||||| | | ||||||| | ||||  || |||||| |||| ||||||||||||| ||| |  |||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcg 15574  T
Q  126 cttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 185  Q
    ||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15575 cttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23192 - 23328
Alignment:
Q  26 aaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 125  Q
    ||||||| |||| ||||||  ||||||||||||||||||| | | ||||||  | ||||  || |||||| ||||||| || |||| || ||| | ||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcg 23291  T
Q  126 cttaagcgaag-tgagccttagtcagcctctttttgaa 162  Q
    ||||||||||| ||| |||||||||||| |||||||||    
T  23292 cttaagcgaagatga-ccttagtcagccactttttgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  340 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  340 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 392  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 4153 - 4281
Alignment:
Q  22 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatct 121  Q
    |||||||||||  ||||||||||  |  |||||||||||||||| | ||| ||||||| |||||||| | |||||||| | ||||||||| ||||||       
T  4153 agcgaaaaaccaatttgattctgccaagagttcgctcaagcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagac 4252  T
Q  122 gtcgcttaagcgaagtgagccttagtcag 150  Q
    ||||||||||||||||   ||||||||||    
T  4253 gtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 17620 - 17492
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    ||||| || |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| |||| |||| ||||| ||||||||| |    
T  17620 acccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccactttctgaa-ttttgtttcgtgcacta 17522  T
Q  181 gggga-cttcttgagcattctaaaatgttt 209  Q
    || || | | ||||||||||||||| ||||    
T  17521 ggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 4274 - 4377
Alignment:
Q  81 acccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacga 180  Q
    |||||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |    
T  4274 acccagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcacta 4371  T
Q  181 ggggac 186  Q
    ||||||    
T  4372 ggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 24178 - 24342
Alignment:
Q  87 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 185  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  186 cttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatcctact 252  Q
    | | |||||  || | || |||||| |||| |||||||| ||||||| |||| |||| |||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtaggcatca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 16215 - 16083
Alignment:
Q  90 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ct 187  Q
    |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| |||||| |     
T  16215 ttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggatcc 16118  T
Q  188 tcttgagcattctaaaatgtttcctttaacttgta 222  Q
    | ||||||||| | ||||||| | || ||||||||    
T  16117 ttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 121344 - 121200
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||| ||||||||||| |||| | | |     
T  121344 tctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgactttt-gcttcgtgcactagggaatcctt 121246  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
    ||||||||| ||||||||||| || |||||||||| || |||||||    
T  121245 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 132221 - 132077
Alignment:
Q  91 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 189  Q
    ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||| ||||||||||| |||| | | |     
T  132221 tctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgactttt-gcttcgtgcactagggaatcctt 132123  T
Q  190 ttgagcattctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
    ||||||||| ||||||||||| || |||||||||| || |||||||    
T  132122 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 3887 - 3975
Alignment:
Q  74 gagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    |||||| ||||||||   |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||    
T  3887 gagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccactttttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 19059 - 19166
Alignment:
Q  128 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtatatc 226  Q
    ||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| |||| |    
T  19059 taagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  227 ccttgtata 235  Q
    | |||||||    
T  19158 ctttgtata 19166  T

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Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 350
Target Start/End: Original strand, 102489 - 102787
Alignment:
Q  50 agttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtc 148  Q
    |||||||||||||||| | | ||||||| | ||||  || ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| ||||||||    
T  102489 agttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtc 102587  T
Q  149 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtatatcccttgtataggtatcagaatc 247  Q
     ||| |||||||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| |||||| || || ||||   | | || ||    
T  102588 ggccactttttgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtc 102685  T
Q  248 ctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattg 347  Q
    ||||   ||||   |||| |||||||| |||||  ||||| || ||| ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||    
T  102686 ctacagaaacaccttggtaatcgaattagttgagtttagt-aaatttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttg 102784  T

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Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 72747 - 72631
Alignment:
Q  69 taagcgagcaggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 168  Q
    ||||||||||  ||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  72747 taagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 72649  T
Q  169 cttcgtgcacgaggggac 186  Q
    |||||||||  |||||||    
T  72648 cttcgtgcattaggggac 72631  T

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Target: scaffold0720 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 3831 - 3966
Alignment:
Q  51 gttcgctcaagcgaaacctaagcgagc-aggacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 149  Q
    ||||||||||||||| | | ||||||| ||||||   || || ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||| |||||||    
T  3831 gttcgctcaagcgaaccgtgagcgagcgaggacctcaactttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtca 3930  T
Q  150 gcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||| ||||||||   ||||||||||||| |||||||    
T  3931 gcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 9950 - 10053
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 382  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| ||    
T  9950 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtatttt 10048  T
Q  383 ctgga 387  Q
    |||||    
T  10049 ctgga 10053  T

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Target: scaffold0107 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 41113 - 41236
Alignment:
Q  13 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaacctaagcgagcaggacccagaccttctgtaagccggtcgcttaagt 112  Q
    ||||| || ||| ||||||| |||  |||||| | ||||||||||||||||||   | ||||||| | ||||  ||||||||| ||||| |||||||||     
T  41113 gaacccgtaagcaaaaaaccatttacattctgcttgaagttcgctcaagcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagc 41212  T
Q  113 gaactatctgtcgcttaagcgaag 136  Q
    ||||||   |||||||||||||||    
T  41213 gaactagacgtcgcttaagcgaag 41236  T

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Target: scaffold0094 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 51657 - 51555
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 220  Q
    |||||||||||||||   | ||||||||||| ||||||||| |||||||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaa-ttttgctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  221 tata 224  Q
    ||||    
T  51558 tata 51555  T

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Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 11631 - 11715
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggac 11715  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  101 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 162  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  283 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 350  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

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Target: scaffold0453 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 11196 - 11258
Alignment:
Q  123 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggac 11258  T

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Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 46685 - 46748
Alignment:
Q  395 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 457  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  46685 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 46748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 50958 - 51021
Alignment:
Q  395 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 457  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  50958 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 51021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  191 tgagcattctaaaatgtttcctttaacttgtatatcccttgtata 235  Q
    |||||||||||||||||||| || |||||||||| || |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  122 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 186  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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