View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14753_low_3 (Length: 363)
Name: NF14753_low_3
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14753_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 31453426 - 31453761
Alignment:
| Q |
13 |
caaaggaacaaaaagaaccaatatttaaaaactagactttacaaatagttcaacctgtaaatcttggttggataaacatcttagaataccttttatagca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31453426 |
caaaggaacaaaaagaaccaatatttaaaaactagactttacaaatagttcaacctgtaaatcttggttggataaacatcttagaataccttttatagca |
31453525 |
T |
|
| Q |
113 |
taccaatttatcatataaacacctctgaataagttattttataatacaagataaaataaagttaaattattttgtatatctagtttataagctattttcg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |
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| T |
31453526 |
taccaatttatcatataaacacctctgaataagttattttataatacaagataaaataaatttaaattattttgtatatttagtttataaactattttcg |
31453625 |
T |
|
| Q |
213 |
taagatatattatcgagcttataaaaatagcttacaaatatgcaataagttgttttcataa--aannnnnnnctttcaaaaagtataacaattgtttatg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31453626 |
taagatatattatcgagcttataaaaatagcttacaaatatgctataagttgttttcataagtgttttttttctttcaaaaagtataacaattgtttatg |
31453725 |
T |
|
| Q |
311 |
tgctactaaatactcaattcggttttatatagtagt |
346 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
31453726 |
tgctactaaatactcaattcggtcttatatagtagt |
31453761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 10749341 - 10749308
Alignment:
| Q |
152 |
tataatacaagataaaataaagttaaattatttt |
185 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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|
| T |
10749341 |
tataataaaagataaaataaagttaaattatttt |
10749308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 26024138 - 26024072
Alignment:
| Q |
120 |
ttatcatataaacacctctgaataagttattt-tataatacaagataaaataaagttaaattatttt |
185 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||| ||| ||||| ||||||||| |||||||||| |
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|
| T |
26024138 |
ttatcatataaacacttatgaataagttatttctattatataagatgaaataaagtcaaattatttt |
26024072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 30770837 - 30770872
Alignment:
| Q |
149 |
ttttataatacaagataaaataaagttaaattattt |
184 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
30770837 |
ttttataataaaagataaaataaagttaaattattt |
30770872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 4558755 - 4558788
Alignment:
| Q |
152 |
tataatacaagataaaataaagttaaattatttt |
185 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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|
| T |
4558755 |
tataataaaagataaaataaagttaaattatttt |
4558788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 8795061 - 8795106
Alignment:
| Q |
141 |
ataagttattt-tataatacaagataaaataaagttaaattatttt |
185 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| ||||| |
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|
| T |
8795061 |
ataagttatttatataataaaagataaaataaagttaaataatttt |
8795106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 37788806 - 37788850
Alignment:
| Q |
141 |
ataagttattttataatacaagataaaataaagttaaattatttt |
185 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| ||||||||| |
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|
| T |
37788806 |
ataagttattttataacaaaagataaaataaagtccaattatttt |
37788850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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