View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14753_low_4 (Length: 335)
Name: NF14753_low_4
Description: NF14753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14753_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 335
Target Start/End: Complemental strand, 6426627 - 6426323
Alignment:
| Q |
28 |
catcatcatcaagtagtttttgccacgtatcagatcaagtgcctgcaagaaacaaacaataaatagagtacagataatagtatgtcctacttaatgaatt |
127 |
Q |
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| T |
6426627 |
catcaacatcaagtagtttttgccacgtatcagatcaagtgcctgcaagaaacaaacaataaatagagtacagataatagtatgtcctacttaatgaatt |
6426528 |
T |
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| Q |
128 |
tatcttcttaagcaaatatattatatgtaacgcttacgtcttacacttcagattaaaggcttatccagtgtcgcacacatgttatattcaataactttca |
227 |
Q |
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| T |
6426527 |
tatctt---aagcaaatatattctatgtaacgcttacgtcttacacttcagattaaaggcttatccattgtcgcacacatgttatattcaataactttca |
6426431 |
T |
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| Q |
228 |
ttttttaaattattacatatgtctatttctcagtgccgtattcagtgtctgcatttatgtcggtgcttcataaagtacgttaagcattaatcattatcac |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6426430 |
ttttttaaattattacatatgtctatttctcagtgccgtattcagtgtctgcatttatgtcggtgcttcgtaaagtacgttaagcattaatcattatcac |
6426331 |
T |
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| Q |
328 |
gagtttta |
335 |
Q |
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|||||||| |
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| T |
6426330 |
gagtttta |
6426323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 26035002 - 26035039
Alignment:
| Q |
213 |
attcaataactttcattttttaaattattacatatgtc |
250 |
Q |
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| T |
26035002 |
attcaattactttcattttttaaattattacatgtgtc |
26035039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 20407935 - 20407895
Alignment:
| Q |
213 |
attcaataactttcatttttt-aaattattacatatgtcta |
252 |
Q |
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| T |
20407935 |
attcaatcactttcattttttcaaattattacatatgtcta |
20407895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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