View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14754_high_2 (Length: 464)
Name: NF14754_high_2
Description: NF14754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14754_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 28902754 - 28903065
Alignment:
| Q |
1 |
tactcaattctgagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaatgtcacattttgacattttgttatagtctata |
100 |
Q |
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| T |
28902754 |
tactcaattcagagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaatgtcgcattttgacattttgttatagtctata |
28902853 |
T |
|
| Q |
101 |
aggtaaaattctataactaggatcgtacttttattctttaaagtgaaacattgcattcatcacagttgaacaagtaactcaaattaaaaaactggatttt |
200 |
Q |
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| T |
28902854 |
aggtaaaattctataactaggatcgtacttttattctttaaagtgaaacattgcattcatcacagttgaacaagtaactcaaattaaaaaactggatttt |
28902953 |
T |
|
| Q |
201 |
actttttgcactgatccaaacgatttgaaccctttcagagaataacagtgaggaacctgttggacaatctaggattctttttcagagaaaaatagaacat |
300 |
Q |
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| T |
28902954 |
actttttgcactgatccaaacaatttgaaccctttcagagaataacagtgaggaacctgttggacaatctaggattctttttcagagaaaaatagaacat |
28903053 |
T |
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| Q |
301 |
gtttgttgtttt |
312 |
Q |
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|||||||||||| |
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| T |
28903054 |
gtttgttgtttt |
28903065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 28903125 - 28903200
Alignment:
| Q |
372 |
cttgcaaggtgttttcaaaacagagaccaaagtaacaaaaacaaacacagagaaccagtgcctgtgttacttatag |
447 |
Q |
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| T |
28903125 |
cttgcaaggtgttttcaaaacagagaccaaagtaacaaaaacaaacacaaagaaccagtgcctgtgttacttatag |
28903200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 28936257 - 28936329
Alignment:
| Q |
239 |
agaataacagtgaggaacctgttggacaatctaggattctttttcagagaaaaatagaacatgtttgttgtttt |
312 |
Q |
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| T |
28936257 |
agaataacagtgatgaaccagttgggcaatctaggattctttttcaaag-ataatagaacatgtttgctgtttt |
28936329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28935951 - 28936019
Alignment:
| Q |
1 |
tactcaattctgagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaat |
69 |
Q |
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|||||||||| ||||||||||||||||||| |||||| ||||||| | || |||||| ||||||||||| |
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| T |
28935951 |
tactcaattccgagtttccaaccaagaaaagaatgaaataaaacattattaaagttctatgagaaaaat |
28936019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 28892877 - 28892961
Alignment:
| Q |
129 |
ttttattctttaaagtgaaacattgcattcatcacagttgaacaagtaactcaaattaaaaaactggattttactttttgcactg |
213 |
Q |
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||||| || ||||||||||||||| ||||||||||| |||||||||| || ||| ||| ||| ||| |||||||||||||| |
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| T |
28892877 |
ttttagtcattaaagtgaaacattccattcatcacaagccaacaagtaacccacattcaaacactatattctactttttgcactg |
28892961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 34009701 - 34009975
Alignment:
| Q |
1 |
tactcaattctgagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaatgtcacattttgacattttgttatagtctata |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| | ||| ||||||| ||| |
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| T |
34009701 |
tactcaattctgagattccaaccaagaaaataatgaaataaaacaatattgaagttcaataagaaaaaagtcac--------actttattatagttcata |
34009792 |
T |
|
| Q |
101 |
aggtaaaattctataactaggatcgtacttttattctttaaagtgaaacattgcattcatcacagttgaacaagtaactcaaattaaaaaa-ctggattt |
199 |
Q |
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||||||||||| ||||||| |||| |||| |||| || |||||| | ||| ||| || |||| |||||||||||| || ||||| |
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| T |
34009793 |
aggtaaaattccataactatgatcatact---------------gaaatttt--attcattaaagt-gaataaataacccaaattaaaaaaactagattt |
34009874 |
T |
|
| Q |
200 |
tactttttgcactgatccaaacgatttgaaccctttcagagaataacagtgaggaacctgttggacaatctaggattctttttcagagaaaaatagaaca |
299 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
34009875 |
tactttttgcactgattcaaacgatttgaacccttacagagaataacagtaaggaacctgttggacaatctaggattctttttcaaagataaatagaaca |
34009974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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