View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14754_low_4 (Length: 416)

Name: NF14754_low_4
Description: NF14754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14754_low_4
NF14754_low_4
[»] chr5 (5 HSPs)
chr5 (104-402)||(35584308-35584604)
chr5 (220-294)||(3346906-3346980)
chr5 (226-301)||(14325900-14325975)
chr5 (207-260)||(11795245-11795298)
chr5 (207-260)||(13033128-13033181)
[»] chr1 (9 HSPs)
chr1 (222-305)||(21537901-21537984)
chr1 (218-302)||(28942061-28942145)
chr1 (235-291)||(30800453-30800509)
chr1 (221-260)||(11897131-11897170)
chr1 (221-260)||(16448185-16448224)
chr1 (221-260)||(17556830-17556869)
chr1 (219-325)||(21537881-21537987)
chr1 (1-30)||(7781295-7781324)
chr1 (219-260)||(34042773-34042814)
[»] chr8 (9 HSPs)
chr8 (207-260)||(15888352-15888405)
chr8 (221-260)||(28463625-28463664)
chr8 (222-261)||(41450893-41450932)
chr8 (222-260)||(8587247-8587285)
chr8 (212-258)||(17006916-17006962)
chr8 (212-258)||(17570285-17570331)
chr8 (226-260)||(24216119-24216153)
chr8 (1-30)||(13969953-13969982)
chr8 (224-260)||(15688047-15688083)
[»] chr6 (7 HSPs)
chr6 (225-322)||(3421588-3421685)
chr6 (207-260)||(7596977-7597030)
chr6 (224-260)||(14236700-14236736)
chr6 (221-260)||(6068643-6068682)
chr6 (1-31)||(21894234-21894264)
chr6 (207-260)||(7597054-7597107)
chr6 (221-265)||(28747148-28747192)
[»] chr4 (6 HSPs)
chr4 (207-260)||(7579387-7579440)
chr4 (221-260)||(41615690-41615729)
chr4 (219-301)||(17344225-17344307)
chr4 (207-260)||(17344290-17344343)
chr4 (1-29)||(38489338-38489366)
chr4 (222-302)||(50430453-50430533)
[»] chr3 (9 HSPs)
chr3 (221-302)||(8092602-8092683)
chr3 (207-260)||(44785396-44785449)
chr3 (222-302)||(48729574-48729654)
chr3 (221-260)||(8437502-8437541)
chr3 (221-260)||(33942946-33942985)
chr3 (221-260)||(43323074-43323113)
chr3 (226-260)||(14848276-14848310)
chr3 (33-101)||(2300506-2300574)
chr3 (1-29)||(44947352-44947380)
[»] chr2 (7 HSPs)
chr2 (218-323)||(37804339-37804444)
chr2 (212-260)||(16734860-16734908)
chr2 (222-285)||(15243990-15244053)
chr2 (218-285)||(36089495-36089562)
chr2 (221-260)||(41492910-41492949)
chr2 (222-260)||(12170414-12170452)
chr2 (207-251)||(37804325-37804369)
[»] scaffold0650 (1 HSPs)
scaffold0650 (223-260)||(1-38)
[»] chr7 (6 HSPs)
chr7 (207-260)||(94318-94371)
chr7 (219-260)||(1565741-1565782)
chr7 (219-260)||(31319411-31319452)
chr7 (207-260)||(36583472-36583525)
chr7 (207-260)||(38441537-38441590)
chr7 (221-261)||(40840133-40840173)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 104 - 402
Target Start/End: Complemental strand, 35584604 - 35584308
Alignment:
Q  104 aacacaccgaagtgacttttaagtttacgtcttaaattaaaatcacataagtgaacttatagacacacacttatcattgaaaaggtnnnnnnnnnnnnnn 203  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  35584604 aacacaacgaagtgacttttaagtttaagtcttaaattaaaatcacataagtgaacttatagacacacacttatcattgaaaaggtaaaaaaaataaaaa 35584505  T
Q  204 nnntacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgact 303  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||| |||||||||||||||||    
T  35584504 a--tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgtacctgaactgaatt-cgaatcagatacatcaatttatgttgact 35584408  T
Q  304 cagctttatttt-ataaataagacccgggggagaattggttaaccatgtttctaaattcagcttcttattcattattagtacccatatagtgtacttcat 402  Q
    || |||| |||| |||||||||||| | ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35584407 caactttctttttataaataagaccagagggagaactcattaaccatgtttctaaattcagcttcttattcattattagtacccatatagtgtacttcat 35584308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 3346906 - 3346980
Alignment:
Q  220 tctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaattt 294  Q
    ||||| ||||||||||| ||  |||||||||||||||||||||||  ||||| || | |||||||| ||||||||    
T  3346906 tctatatataagagaaagtttcgtcaacaaaagttgatgtacctagtttaaaatttggatcagatacatcaattt 3346980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 14325975 - 14325900
Alignment:
Q  226 tataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttga 301  Q
    |||||||||||||||||| ||||||| ||||| || ||| | ||||||| |||||| ||| || ||||| ||||||    
T  14325975 tataagagaaaattgagttaacaaaatttgatatatctagactaaattttgaatcaaatacattaatttttgttga 14325900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 11795298 - 11795245
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| |||||| | |||||||||||||||  ||| |||||||||||||||||||    
T  11795298 tactccctccagtcctatttataagagaattttgggtcaacaaaagttgatgta 11795245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 13033181 - 13033128
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| ||||| || |||||||||||||||  ||| |||||||||||||||||||    
T  13033181 tactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgta 13033128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 21537984 - 21537901
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgactca 305  Q
    ||||||||||||||||||||||||||||||||||||||| || || |||| || |||||||||| ||||| ||  |||||||||    
T  21537984 tatttataagagaaaattgagtcaacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaactttcgttgactca 21537901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 28942061 - 28942145
Alignment:
Q  218 attctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgac 302  Q
    ||||||| ||||||| |||||||| |||| |||| || |||||  | | |||||||| ||||||||||||||||||| |||||||    
T  28942061 attctatatataagataaaattgaatcaataaaaattaatgtatttgacttaaattttgaatcagatatatcaatttttgttgac 28942145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 30800453 - 30800509
Alignment:
Q  235 aaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaa 291  Q
    |||||||||||||||||||||||||| ||| | | ||||| |||||||||| |||||    
T  30800453 aaattgagtcaacaaaagttgatgtatctatactgaattttgaatcagatacatcaa 30800509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 11897170 - 11897131
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  11897170 ctatttataagagaaatttgggtcaacaaaagttgatgta 11897131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 16448224 - 16448185
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  16448224 ctatttataagagaaagttgggtcaacaaaagttgatgta 16448185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 17556869 - 17556830
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  17556869 ctatttataagagaaacttgggtcaacaaaagttgatgta 17556830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 21537881 - 21537987
Alignment:
Q  219 ttctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgactcagctttattttata 318  Q
    ||||||||| |||||| | |||||||||| |||||||||||| || | | ||||||    ||||||| ||||| || ||||||||||  ||| | |||||    
T  21537881 ttctatttacaagagagagttgagtcaacgaaagttgatgtatctgattcaaattttagttcagatacatcaacttttgttgactcaattttctcttata 21537980  T
Q  319 aataaga 325  Q
    |||||||    
T  21537981 aataaga 21537987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7781295 - 7781324
Alignment:
Q  1 tcgtttgatggctttaccaaacagacccta 30  Q
    ||||||||||||||||||||||||||||||    
T  7781295 tcgtttgatggctttaccaaacagacccta 7781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 34042814 - 34042773
Alignment:
Q  219 ttctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  34042814 ttctatttataagagaattttgggtcaacaaaagttgatgta 34042773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 15888352 - 15888405
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| |||||| |||||||||||||||||  ||| |||||||||||||||||||    
T  15888352 tactccctccagttctatttataagagaattttgggtcaacaaaagttgatgta 15888405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 28463625 - 28463664
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  28463625 ctatttataagagaaagttgggtcaacaaaagttgatgta 28463664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 41450893 - 41450932
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgtac 261  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  41450893 tatttataagagaaaattaagtaaacaaaagttgatgtac 41450932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 8587285 - 8587247
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  8587285 tatttataagagaaacttgagtcaataaaagttgatgta 8587247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 17006916 - 17006962
Alignment:
Q  212 cctccaattctatttataagagaaaattgagtcaacaaaagttgatg 258  Q
    ||||| || |||||||||||||||| ||| |||||||||||||||||    
T  17006916 cctccgatcctatttataagagaaagttgggtcaacaaaagttgatg 17006962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 17570331 - 17570285
Alignment:
Q  212 cctccaattctatttataagagaaaattgagtcaacaaaagttgatg 258  Q
    ||||| || |||||||||||||||| ||| |||||||||||||||||    
T  17570331 cctccgatcctatttataagagaaagttgggtcaacaaaagttgatg 17570285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 24216119 - 24216153
Alignment:
Q  226 tataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||| ||||||||||||||||||||||||||    
T  24216119 tataagaggaaattgagtcaacaaaagttgatgta 24216153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13969982 - 13969953
Alignment:
Q  1 tcgtttgatggctttaccaaacagacccta 30  Q
    ||||||||||||||||||||||||||||||    
T  13969982 tcgtttgatggctttaccaaacagacccta 13969953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 15688047 - 15688083
Alignment:
Q  224 tttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  15688047 tttataagagaaagttgggtcaacaaaagttgatgta 15688083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 3421685 - 3421588
Alignment:
Q  225 ttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgactcagctttattttataaata 322  Q
    ||||||| |||| |||||||||||||||||||| || ||| ||| | |||  ||| ||||||||||| || ||||||||||  ||| | |||||||||    
T  3421685 ttataagtgaaagttgagtcaacaaaagttgatatatctagattgattttttaataagatatatcaacttttgttgactcaaatttttcttataaata 3421588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 7596977 - 7597030
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| |||||||| ||||||||| |||||| ||||||||| |||||||||||||    
T  7596977 tactccctccaatcctatttataggagaaatttgagtcaataaaagttgatgta 7597030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 14236736 - 14236700
Alignment:
Q  224 tttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14236736 tttataagagaaagttgagtcaacaaaagttgatgta 14236700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 6068682 - 6068643
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  6068682 ctatttataagagaattttgagtcaacaaaagttgatgta 6068643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 21894264 - 21894234
Alignment:
Q  1 tcgtttgatggctttaccaaacagaccctat 31  Q
    |||||||||||||||||||||||||||||||    
T  21894264 tcgtttgatggctttaccaaacagaccctat 21894234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 7597107 - 7597054
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| ||||||||  ||||||||||||||| ||| || ||||||||||||||||    
T  7597107 tactccctccaatcttatttataagagaaagttgtgttaacaaaagttgatgta 7597054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 28747148 - 28747192
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgtacctaa 265  Q
    |||||||||||||||  ||| ||||||||||||||||||| ||||    
T  28747148 ctatttataagagaattttgggtcaacaaaagttgatgtatctaa 28747192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 7579440 - 7579387
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||  |||||||||||||||||  ||| |||||||||||||||||||    
T  7579440 tacttcctccggttctatttataagagaattttgggtcaacaaaagttgatgta 7579387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 41615690 - 41615729
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  41615690 ctatttataagagaaaattggatcaacaaaagttgatgta 41615729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 17344225 - 17344307
Alignment:
Q  219 ttctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttga 301  Q
    |||||||||||||||||| || | |||||||||||||||||| || || | |||||  |||| |||| ||||| || ||||||    
T  17344225 ttctatttataagagaaagttaaatcaacaaaagttgatgtatctgaactgaatttttaatcggatacatcaacttttgttga 17344307  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 17344343 - 17344290
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| ||||||||  ||||||||||||||| |||  ||||||||||||||||||    
T  17344343 tactccctccaatcttatttataagagaaatttggatcaacaaaagttgatgta 17344290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38489366 - 38489338
Alignment:
Q  1 tcgtttgatggctttaccaaacagaccct 29  Q
    |||||||||||||||||||||||||||||    
T  38489366 tcgtttgatggctttaccaaacagaccct 38489338  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 50430533 - 50430453
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgac 302  Q
    |||||||||||| || ||| |||||||||||||||||||  |  ||| |||||  || |||||| |||||||| |||||||    
T  50430533 tatttataagagcaagttgggtcaacaaaagttgatgtatttggattgaatttttaaccagatacatcaatttttgttgac 50430453  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 8092602 - 8092683
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgac 302  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||  | |||||||  || |||||| ||||| || |||||||    
T  8092602 ctatttataagagaaaattgaatcaactaaagttgatgtatctcgactaaatttttaaccagatacatcaacttctgttgac 8092683  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 44785396 - 44785449
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||  |||||||||||||||||  ||| |||||||||||||||||||    
T  44785396 tacttcctccggttctatttataagagaattttgggtcaacaaaagttgatgta 44785449  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 48729654 - 48729574
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgac 302  Q
    ||||||||||||| | |||||| || ||||||||||||| || | | |||||| |||| ||||||||||| || |||||||    
T  48729654 tatttataagagacatttgagttaataaaagttgatgtatctgattaaaattttgaattagatatatcaacttttgttgac 48729574  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 8437541 - 8437502
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  8437541 ctatttataagagaattttgagtcaacaaaagttgatgta 8437502  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 33942946 - 33942985
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  33942946 ctatttataagagaaacttgggtcaacaaaagttgatgta 33942985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 43323074 - 43323113
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  43323074 ctatttataagaaaaaattgggtcaacaaaagttgatgta 43323113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 14848276 - 14848310
Alignment:
Q  226 tataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||||||| |||||||||||||||||||    
T  14848276 tataagagaaaattgggtcaacaaaagttgatgta 14848310  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 2300574 - 2300506
Alignment:
Q  33 tattttactttcaactcatttttaattaaaactaatttattcaaaattaaattttgtcacagtagaatc 101  Q
    |||||||| || |||||| |||||||||| |  |||||||||||||||| ||||| |||| | ||||||    
T  2300574 tattttacatttaactcacttttaattaacatcaatttattcaaaattagattttatcaccgcagaatc 2300506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44947352 - 44947380
Alignment:
Q  1 tcgtttgatggctttaccaaacagaccct 29  Q
    |||||||||||||||||||||||||||||    
T  44947352 tcgtttgatggctttaccaaacagaccct 44947380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 37804444 - 37804339
Alignment:
Q  218 attctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagatatatcaatttatgttgactcagctttattttat 317  Q
    ||||||||||||||| ||| |||  ||||||||| || ||||| || | | |||  | ||||||||||||| ||||| ||||||||||  ||| ||||||    
T  37804444 attctatttataagaaaaatttggatcaacaaaaattaatgtatctgattaaaaaattgaatcagatatattaatttttgttgactcaaatttcttttat 37804345  T
Q  318 aaataa 323  Q
    ||||||    
T  37804344 aaataa 37804339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 16734908 - 16734860
Alignment:
Q  212 cctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||| | |||||||||||||||| |||||| ||||||||||||||||    
T  16734908 cctccagtcctatttataagagaaagttgagtaaacaaaagttgatgta 16734860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 15243990 - 15244053
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagata 285  Q
    ||||||||||||| | |||| |||||||||||||||||| |||   ||||||| ||||||||||    
T  15243990 tatttataagagatatttgaatcaacaaaagttgatgtatctagtctaaattttgaatcagata 15244053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 36089562 - 36089495
Alignment:
Q  218 attctatttataagagaaaattgagtcaacaaaagttgatgtacctaaattaaatttcgaatcagata 285  Q
    |||||||||| |||||| | |||||| || ||||||||||||| |||  |||||||| ||||||||||    
T  36089562 attctatttagaagagatatttgagttaataaaagttgatgtatctagtttaaattttgaatcagata 36089495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 41492910 - 41492949
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  41492910 ctatttataagagaaatttgggtcaacaaaagttgatgta 41492949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 12170414 - 12170452
Alignment:
Q  222 tatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  12170414 tatttataagagaaacttgggtcaacaaaagttgatgta 12170452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 37804325 - 37804369
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaa 251  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  37804325 tactccctccaattttatttataaaagaaatttgagtcaacaaaa 37804369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 1 - 38
Alignment:
Q  223 atttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||| | |||||||||||||||||||||    
T  1 atttataagagaaagtcgagtcaacaaaagttgatgta 38  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 94318 - 94371
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| ||||| || |||||||||||||||  ||| |||||||||||||||||||    
T  94318 tactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgta 94371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 1565741 - 1565782
Alignment:
Q  219 ttctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  1565741 ttctatttataagagaattttgggtcaacaaaagttgatgta 1565782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 31319411 - 31319452
Alignment:
Q  219 ttctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  31319411 ttctatttataagagaattttgggtcaacaaaagttgatgta 31319452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 36583525 - 36583472
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    |||| ||||| || |||||||||||||||  ||| |||||||||||||||||||    
T  36583525 tactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgta 36583472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 38441590 - 38441537
Alignment:
Q  207 tacttcctccaattctatttataagagaaaattgagtcaacaaaagttgatgta 260  Q
    ||||||||||  | |||||||||||||||  ||| |||||||||||||||||||    
T  38441590 tacttcctccggtcctatttataagagaattttgggtcaacaaaagttgatgta 38441537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 40840133 - 40840173
Alignment:
Q  221 ctatttataagagaaaattgagtcaacaaaagttgatgtac 261  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  40840133 ctatttataagagaaatttttgtcaacaaaagttgatgtac 40840173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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