View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14754_low_6 (Length: 395)
Name: NF14754_low_6
Description: NF14754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14754_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 207 - 395
Target Start/End: Original strand, 51293936 - 51294124
Alignment:
| Q |
207 |
aagttttacaaccatgataaatcaacaactatttttattagccatttcaaggaatcttgatcgtttcatttagctgagtaattattattatttatctgaa |
306 |
Q |
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| T |
51293936 |
aagttttacaaccatgataaatcaacaactatttttattagccatttcaaggaatcttgatcgtttcatttagctgagtaattattattatttatcagaa |
51294035 |
T |
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| Q |
307 |
attaaagaaaagctttaccaaattaatcttattaaccagggatgtatttccattatcataaaatactcatatttttgttgcattgcatg |
395 |
Q |
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| T |
51294036 |
attaaagaaaagctttaccaaattaatcttattaaccagggatgtatttccattatcataaaatactcatatttttgttgcattgcatg |
51294124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 51293692 - 51293890
Alignment:
| Q |
11 |
tgagatgaatcgtgagaaagacatacattcaacaaagttaggagcagaagcattaacctaattacgtaggcactattatatttatttatttatataaaga |
110 |
Q |
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| T |
51293692 |
tgagatgaaaagtgagaaagacatacattcaacaaagttaggagcagaagcattaatctaattccgtaggcactattatat---tttatttatataaaga |
51293788 |
T |
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| Q |
111 |
aggcatcttttgtgtgggggaaacaaaagcaaagctgggtgg---gtagtagtgttgcaaggaaaaagggaagaaccgcagcaggtttagtcaaaataca |
207 |
Q |
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| T |
51293789 |
aggcatcttttgtgtgggggaaacaaaagcaaagctgggtgggtagtagtagtgttgcaaggaaaaagggaagaaccgcagcaggttaagtcaaaataca |
51293888 |
T |
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